Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WAZ89_RS08615 Genome accession   NZ_CP147083
Coordinates   1525304..1525840 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain JSWP006     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1520304..1530840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAZ89_RS08595 (WAZ89_08595) aphA 1520592..1521305 (+) 714 WP_001226928.1 acid phosphatase AphA -
  WAZ89_RS08600 (WAZ89_08600) yjbQ 1521416..1521832 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  WAZ89_RS08605 (WAZ89_08605) yjbR 1521836..1522192 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  WAZ89_RS08610 (WAZ89_08610) uvrA 1522227..1525049 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  WAZ89_RS08615 (WAZ89_08615) ssb 1525304..1525840 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  WAZ89_RS08620 (WAZ89_08620) yjcB 1525939..1526220 (-) 282 WP_001295689.1 YjcB family protein -
  WAZ89_RS08625 (WAZ89_08625) pdeC 1526650..1528236 (+) 1587 WP_001550430.1 c-di-GMP phosphodiesterase PdeC -
  WAZ89_RS08630 (WAZ89_08630) soxS 1528239..1528562 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  WAZ89_RS08635 (WAZ89_08635) soxR 1528648..1529112 (+) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=858654 WAZ89_RS08615 WP_000168305.1 1525304..1525840(+) (ssb) [Escherichia coli strain JSWP006]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=858654 WAZ89_RS08615 WP_000168305.1 1525304..1525840(+) (ssb) [Escherichia coli strain JSWP006]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACTGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGCCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489