Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   Q2310_RS21050 Genome accession   NZ_CP130491
Coordinates   4115644..4116684 (-) Length   346 a.a.
NCBI ID   WP_316263030.1    Uniprot ID   -
Organism   Bacillus cereus strain T     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4110644..4121684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2310_RS21005 (Q2310_20965) - 4111077..4111277 (-) 201 WP_000106083.1 YqzE family protein -
  Q2310_RS21010 (Q2310_20970) aroK 4111316..4111813 (-) 498 WP_000836624.1 shikimate kinase AroK -
  Q2310_RS21015 (Q2310_20975) - 4111929..4112579 (-) 651 WP_000183867.1 2OG-Fe(II) oxygenase -
  Q2310_RS21020 (Q2310_20980) comGG 4112754..4113125 (-) 372 WP_001231318.1 competence type IV pilus minor pilin ComGG -
  Q2310_RS21025 (Q2310_20985) comGF 4113122..4113592 (-) 471 WP_025709783.1 competence type IV pilus minor pilin ComGF -
  Q2310_RS21030 (Q2310_20990) - 4113562..4113864 (-) 303 WP_000829464.1 hypothetical protein -
  Q2310_RS21035 (Q2310_20995) comGD 4113857..4114312 (-) 456 WP_000813141.1 competence type IV pilus minor pilin ComGD -
  Q2310_RS21040 (Q2310_21000) comGC 4114309..4114608 (-) 300 WP_001178684.1 competence type IV pilus major pilin ComGC -
  Q2310_RS21045 (Q2310_21005) comGB 4114620..4115657 (-) 1038 WP_044306401.1 competence type IV pilus assembly protein ComGB -
  Q2310_RS21050 (Q2310_21010) comGA 4115644..4116684 (-) 1041 WP_316263030.1 competence type IV pilus ATPase ComGA Machinery gene
  Q2310_RS21055 (Q2310_21015) - 4116894..4117589 (+) 696 WP_000434125.1 metalloregulator ArsR/SmtB family transcription factor -
  Q2310_RS21060 (Q2310_21020) - 4117715..4117957 (+) 243 WP_000440716.1 DUF2626 domain-containing protein -
  Q2310_RS21065 (Q2310_21025) - 4118065..4119459 (+) 1395 WP_025709781.1 L-cystine transporter -
  Q2310_RS21070 (Q2310_21030) - 4119539..4119931 (-) 393 WP_061113705.1 hypothetical protein -
  Q2310_RS21075 (Q2310_21035) - 4120019..4120234 (-) 216 WP_001008327.1 DUF3912 family protein -
  Q2310_RS21080 (Q2310_21040) - 4120487..4120798 (+) 312 WP_001093237.1 hypothetical protein -
  Q2310_RS21085 (Q2310_21045) - 4120833..4121321 (-) 489 WP_000764267.1 hypothetical protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 39011.44 Da        Isoelectric Point: 8.7198

>NTDB_id=858654 Q2310_RS21050 WP_316263030.1 4115644..4116684(-) (comGA) [Bacillus cereus strain T]
MGLKFFANAILKEACRVQASDLHIVPRQKDVAVQLRIGKDLMTIQCIEKEFGEKLVSHFKFLASMDIGEKRKPQNGSLYL
QIDGQEVYLRLSTLPTVYQESLVIRLHLQASVQPLSHLSLFPSTAAKLLSFLRYSQGLLVFTGPTGSGKTTTMYALLEVI
RKKKTRRIITLEDPVEKRSDDVLQIQINEKAGLTYETGLKAILRHDPDIILVGEIRDEETAKIAIRASLTGHLVMTTLHT
NDAKGAIIRFIDYGITRQEIEQSLLAVAAQRLVELKCPFCRGKCSTLCKSMRQVRQASIYELLYGYELKQALKEADGECV
TYKHETLESSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=858654 Q2310_RS21050 WP_316263030.1 4115644..4116684(-) (comGA) [Bacillus cereus strain T]
ATGGGATTGAAATTTTTTGCGAATGCAATTTTAAAAGAAGCGTGTAGGGTACAAGCGTCAGATTTACATATTGTGCCCCG
GCAGAAGGATGTAGCGGTGCAACTACGTATAGGAAAAGATTTAATGACGATACAGTGTATTGAAAAGGAGTTTGGAGAAA
AACTTGTCTCACATTTCAAATTTTTAGCATCTATGGACATAGGCGAGAAACGGAAGCCACAGAATGGTTCGTTGTATTTG
CAAATTGATGGACAAGAAGTGTATTTACGCCTTTCCACACTTCCAACAGTATATCAAGAAAGTCTTGTTATTCGTCTTCA
TTTACAAGCATCTGTTCAGCCCTTATCACATCTTTCGTTATTTCCAAGTACGGCAGCAAAACTACTCTCGTTTTTACGCT
ATTCACAGGGGCTACTTGTGTTTACTGGACCGACTGGATCTGGGAAGACGACGACAATGTATGCATTATTAGAGGTAATT
AGAAAAAAGAAAACACGTCGCATCATTACACTTGAAGATCCGGTTGAAAAAAGAAGTGACGATGTATTACAAATTCAAAT
AAATGAAAAAGCGGGTCTCACATATGAAACAGGATTAAAGGCTATTTTACGTCATGATCCAGATATTATTTTAGTCGGTG
AAATCCGTGATGAAGAAACAGCAAAAATAGCTATAAGAGCAAGTTTGACAGGACATTTAGTAATGACAACGCTGCATACG
AATGATGCGAAAGGAGCAATCATTCGTTTCATAGATTATGGTATAACGAGGCAAGAGATTGAACAGTCTTTATTGGCTGT
AGCTGCACAGCGACTTGTCGAATTGAAGTGTCCGTTTTGCAGAGGAAAGTGCTCAACTTTATGTAAATCAATGAGGCAAG
TAAGGCAGGCTAGCATTTATGAGCTACTATATGGATATGAGTTAAAACAAGCGCTTAAAGAAGCTGATGGAGAATGTGTT
ACTTACAAACATGAGACTTTAGAATCATCAATACGAAAAGGATATGCTTTAGGTTTTTTAGAAGAAGATGTTTATGTTTA
A

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

56.677

97.399

0.552
  pilB Haemophilus influenzae 86-028NP

39.752

93.064

0.37