Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   Q2T90_RS11310 Genome accession   NZ_CP130489
Coordinates   2299014..2299877 (+) Length   287 a.a.
NCBI ID   WP_302885669.1    Uniprot ID   -
Organism   Staphylococcus devriesei strain GYZ2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2282119..2315875 2299014..2299877 within 0


Gene organization within MGE regions


Location: 2282119..2315875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2T90_RS11245 (Q2T90_11245) ftsY 2283588..2284808 (+) 1221 WP_103166705.1 signal recognition particle-docking protein FtsY -
  Q2T90_RS11250 (Q2T90_11250) - 2284795..2285127 (+) 333 WP_107505732.1 putative DNA-binding protein -
  Q2T90_RS11255 (Q2T90_11255) ffh 2285180..2286550 (+) 1371 WP_103166703.1 signal recognition particle protein -
  Q2T90_RS11260 (Q2T90_11260) rpsP 2286782..2287057 (+) 276 WP_103166702.1 30S ribosomal protein S16 -
  Q2T90_RS11265 (Q2T90_11265) rimM 2287317..2287820 (+) 504 WP_107520235.1 ribosome maturation factor RimM -
  Q2T90_RS11270 (Q2T90_11270) trmD 2287820..2288560 (+) 741 WP_302885665.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  Q2T90_RS11275 (Q2T90_11275) rplS 2288662..2289012 (+) 351 WP_103166699.1 50S ribosomal protein L19 -
  Q2T90_RS11280 (Q2T90_11280) - 2289440..2292049 (-) 2610 WP_107505734.1 YfhO family protein -
  Q2T90_RS11285 (Q2T90_11285) - 2292042..2294642 (-) 2601 WP_302885666.1 YfhO family protein -
  Q2T90_RS11290 (Q2T90_11290) ylqF 2294885..2295769 (+) 885 WP_302885667.1 ribosome biogenesis GTPase YlqF -
  Q2T90_RS11295 (Q2T90_11295) - 2295753..2296520 (+) 768 WP_302885668.1 ribonuclease HII -
  Q2T90_RS11300 (Q2T90_11300) sucC 2296632..2297798 (+) 1167 WP_103166256.1 ADP-forming succinate--CoA ligase subunit beta -
  Q2T90_RS11305 (Q2T90_11305) sucD 2297820..2298725 (+) 906 WP_107505737.1 succinate--CoA ligase subunit alpha -
  Q2T90_RS11310 (Q2T90_11310) dprA 2299014..2299877 (+) 864 WP_302885669.1 DNA-processing protein DprA Machinery gene
  Q2T90_RS11315 (Q2T90_11315) topA 2300076..2302145 (+) 2070 WP_103166259.1 type I DNA topoisomerase -
  Q2T90_RS11320 (Q2T90_11320) trmFO 2302171..2303478 (+) 1308 WP_302885670.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  Q2T90_RS11325 (Q2T90_11325) xerC 2303621..2304514 (+) 894 WP_103166261.1 tyrosine recombinase XerC -
  Q2T90_RS11330 (Q2T90_11330) hslV 2304515..2305060 (+) 546 WP_103166262.1 ATP-dependent protease subunit HslV -
  Q2T90_RS11335 (Q2T90_11335) hslU 2305120..2306526 (+) 1407 WP_103166263.1 ATP-dependent protease ATPase subunit HslU -
  Q2T90_RS11340 (Q2T90_11340) codY 2306548..2307321 (+) 774 WP_103166264.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  Q2T90_RS11345 (Q2T90_11345) rpsB 2307583..2308371 (+) 789 WP_103166265.1 30S ribosomal protein S2 -
  Q2T90_RS11350 (Q2T90_11350) tsf 2308635..2309513 (+) 879 WP_103166266.1 translation elongation factor Ts -
  Q2T90_RS11355 (Q2T90_11355) pyrH 2309649..2310371 (+) 723 WP_103166267.1 UMP kinase -
  Q2T90_RS11360 (Q2T90_11360) frr 2310388..2310942 (+) 555 WP_302885671.1 ribosome recycling factor -
  Q2T90_RS11365 (Q2T90_11365) - 2311303..2312073 (+) 771 WP_103166269.1 isoprenyl transferase -
  Q2T90_RS11370 (Q2T90_11370) - 2312077..2312859 (+) 783 WP_103166270.1 phosphatidate cytidylyltransferase -
  Q2T90_RS11375 (Q2T90_11375) rseP 2313077..2314363 (+) 1287 WP_302885672.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32963.00 Da        Isoelectric Point: 9.1231

>NTDB_id=858606 Q2T90_RS11310 WP_302885669.1 2299014..2299877(+) (dprA) [Staphylococcus devriesei strain GYZ2]
MNNDHLLLKMIWAGYSTQQVHHLLKLNPELLTYSYRDQLDTLKTWEQLYSHKKLIDYVSNLEVNKILTYLKSHNINYLTS
FNSLYPSLLKEIYDYPLILFYRGNPRLFNTTYTLGVVGSRNATTYSADALRYLFSHFPIDPPLTIISGLAIGADSLAHYY
ALKYSLPTIAVLGYGHLKHYPKETWKLRNIIEEKGLVISEHPPFKNIARYHFPQRNRLISGLSRGVLITEARIKSGSQIT
IDCAIEQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAEDILCDY

Nucleotide


Download         Length: 864 bp        

>NTDB_id=858606 Q2T90_RS11310 WP_302885669.1 2299014..2299877(+) (dprA) [Staphylococcus devriesei strain GYZ2]
ATGAATAATGACCATTTATTATTAAAGATGATATGGGCTGGTTATTCAACCCAACAAGTGCATCATCTTTTGAAATTAAA
TCCAGAACTTTTAACTTATTCCTATAGAGATCAGTTAGATACTTTAAAGACCTGGGAGCAGCTATACAGTCATAAGAAAT
TAATAGATTATGTTAGTAACCTTGAAGTTAATAAAATCTTAACTTATTTAAAAAGCCACAATATTAATTACCTAACTTCA
TTTAATTCCTTATATCCTTCCTTACTCAAAGAAATTTATGATTATCCTTTGATACTATTTTACAGAGGCAACCCCCGATT
ATTTAACACGACATATACTTTAGGCGTAGTTGGTTCACGTAACGCCACCACTTACTCTGCTGATGCACTCCGATATTTGT
TTTCGCACTTTCCTATAGATCCCCCACTAACTATTATTTCTGGACTTGCTATTGGAGCCGATAGTCTGGCTCATTACTAT
GCGTTAAAATATAGTCTTCCTACGATAGCAGTTCTAGGTTATGGCCACTTAAAACATTACCCTAAAGAAACTTGGAAATT
ACGCAATATAATTGAAGAAAAAGGGTTAGTTATCAGTGAACATCCTCCTTTTAAAAATATAGCAAGATATCACTTTCCAC
AACGTAATCGTTTGATTAGTGGCCTTTCACGAGGTGTACTGATTACAGAAGCAAGAATTAAGAGTGGTAGTCAAATTACC
ATTGATTGTGCAATCGAACAAAATAGAAACGTTTATGTGTTACCAGGCTCAATGTTTAACCCTCTCACTAAAGGAAATTT
GTTGAGAGCACAAGAGGGTGCTATGATTGTTTCAGAAGCTGAAGATATTTTATGCGACTATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

54.545

99.652

0.544
  dprA Staphylococcus aureus N315

54.545

99.652

0.544