Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   Q2T90_RS10375 Genome accession   NZ_CP130489
Coordinates   2101858..2102442 (-) Length   194 a.a.
NCBI ID   WP_107506322.1    Uniprot ID   A0A2T4KUL6
Organism   Staphylococcus devriesei strain GYZ2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2096858..2107442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2T90_RS10345 (Q2T90_10345) - 2097833..2099344 (+) 1512 WP_107505871.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  Q2T90_RS10350 (Q2T90_10350) - 2099435..2100037 (-) 603 WP_302885646.1 CPBP family glutamic-type intramembrane protease -
  Q2T90_RS10355 (Q2T90_10355) - 2100053..2100229 (-) 177 WP_103166787.1 DUF2187 family protein -
  Q2T90_RS10360 (Q2T90_10360) - 2100431..2101420 (+) 990 WP_103166786.1 lipoate--protein ligase -
  Q2T90_RS10375 (Q2T90_10375) comK/comK1 2101858..2102442 (-) 585 WP_107506322.1 competence protein ComK Regulator
  Q2T90_RS10380 (Q2T90_10380) - 2102658..2102876 (+) 219 WP_103166784.1 IDEAL domain-containing protein -
  Q2T90_RS10385 (Q2T90_10385) - 2102954..2103055 (-) 102 WP_252866595.1 SAR1012 family small protein -
  Q2T90_RS10390 (Q2T90_10390) - 2103168..2103389 (-) 222 WP_103166783.1 TM2 domain-containing protein -
  Q2T90_RS10395 (Q2T90_10395) - 2103529..2104086 (+) 558 WP_103166782.1 GNAT family N-acetyltransferase -
  Q2T90_RS10400 (Q2T90_10400) - 2104160..2105098 (-) 939 WP_107506323.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  Q2T90_RS10405 (Q2T90_10405) - 2105277..2106644 (+) 1368 WP_103166780.1 isochorismate synthase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22828.19 Da        Isoelectric Point: 9.5667

>NTDB_id=858605 Q2T90_RS10375 WP_107506322.1 2101858..2102442(-) (comK/comK1) [Staphylococcus devriesei strain GYZ2]
MKQNSSSPNTVYIIRKGDMVIKPIFDEHGQTNGTKIMKYDTSTETSPFKTQKIIERSCKFYGNNYISKKSEAHRIAGITS
KPPILLTPLFPTYLFPTHSDRLEENMWINMHYVLEVKPLKNRKSKIIFANEQALNLNVSYHSLWHQYSNCIYYYYMVDKH
ARMKSNNPEMPIDYEKSTLNIFEALSHYSLLQDR

Nucleotide


Download         Length: 585 bp        

>NTDB_id=858605 Q2T90_RS10375 WP_107506322.1 2101858..2102442(-) (comK/comK1) [Staphylococcus devriesei strain GYZ2]
ATGAAGCAAAATTCATCATCGCCTAATACCGTCTATATTATCCGTAAGGGTGACATGGTAATTAAACCTATATTTGATGA
GCATGGTCAAACTAATGGAACTAAAATTATGAAGTATGACACGTCAACCGAAACTAGTCCTTTTAAAACTCAAAAAATCA
TAGAACGGTCTTGTAAGTTTTATGGAAACAATTACATTAGCAAAAAATCAGAAGCACATCGAATTGCAGGTATCACAAGT
AAACCTCCGATCCTGCTAACTCCTTTGTTCCCTACTTATTTATTTCCTACCCATTCGGATCGCTTAGAAGAGAATATGTG
GATTAACATGCACTACGTTTTAGAAGTAAAACCTCTTAAAAATCGGAAAAGTAAAATCATTTTCGCTAATGAACAAGCTT
TAAACCTCAACGTTTCATATCATAGTTTATGGCACCAATACTCAAATTGTATTTATTACTATTACATGGTTGATAAACAT
GCGCGTATGAAATCTAATAATCCAGAAATGCCTATCGACTATGAAAAATCCACGCTAAATATTTTCGAAGCACTTTCACA
CTATTCCCTATTACAAGATAGATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(11-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4KUL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

64.674

94.845

0.613
  comK/comK1 Staphylococcus aureus N315

64.674

94.845

0.613