Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q2T90_RS03210 Genome accession   NZ_CP130489
Coordinates   626351..626749 (-) Length   132 a.a.
NCBI ID   WP_107505939.1    Uniprot ID   A0A2T4KI24
Organism   Staphylococcus devriesei strain GYZ2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 621351..631749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2T90_RS03185 (Q2T90_03185) thiE 622052..622690 (-) 639 WP_103167522.1 thiamine phosphate synthase -
  Q2T90_RS03190 (Q2T90_03190) thiM 622692..623483 (-) 792 WP_103167523.1 hydroxyethylthiazole kinase -
  Q2T90_RS03195 (Q2T90_03195) thiD 623476..624297 (-) 822 WP_103167524.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Q2T90_RS03200 (Q2T90_03200) tenA 624290..624979 (-) 690 WP_103167525.1 thiaminase II -
  Q2T90_RS03205 (Q2T90_03205) - 625257..625997 (-) 741 WP_103167526.1 transglycosylase family protein -
  Q2T90_RS03210 (Q2T90_03210) ssb 626351..626749 (-) 399 WP_107505939.1 single-stranded DNA-binding protein Machinery gene
  Q2T90_RS03215 (Q2T90_03215) - 626937..627380 (+) 444 WP_107505940.1 YwpF-like family protein -
  Q2T90_RS03220 (Q2T90_03220) fabZ 627464..627901 (-) 438 WP_103166203.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q2T90_RS03225 (Q2T90_03225) murA 628016..629281 (-) 1266 WP_107505941.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q2T90_RS03230 (Q2T90_03230) - 629380..629610 (-) 231 WP_103166205.1 DUF1146 family protein -
  Q2T90_RS03235 (Q2T90_03235) - 629997..630398 (-) 402 WP_103166206.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15159.10 Da        Isoelectric Point: 4.9662

>NTDB_id=858588 Q2T90_RS03210 WP_107505939.1 626351..626749(-) (ssb) [Staphylococcus devriesei strain GYZ2]
MLNKIVIVGRMTKDAQIYDKEEVKIATFSVATERNYKDENNEIACDYIFCKAFGKTASNIEKYTSQGSLVGITGQMRSRK
YEKDGQTHFVTELYVETIKFMSPQSKNNELLTSLTYDEDTYPLNNLEITNIN

Nucleotide


Download         Length: 399 bp        

>NTDB_id=858588 Q2T90_RS03210 WP_107505939.1 626351..626749(-) (ssb) [Staphylococcus devriesei strain GYZ2]
ATGCTAAATAAGATAGTCATAGTTGGCCGTATGACCAAAGACGCACAAATTTACGATAAAGAGGAGGTGAAAATCGCTAC
CTTCAGTGTTGCTACTGAACGTAATTATAAAGATGAAAATAATGAAATAGCTTGTGATTATATTTTTTGTAAAGCATTCG
GCAAAACAGCTAGTAATATTGAAAAATATACTAGTCAAGGATCACTTGTAGGTATAACAGGACAAATGCGCTCCCGCAAA
TATGAAAAAGACGGACAAACTCACTTTGTAACGGAATTATACGTTGAAACTATTAAATTTATGTCTCCCCAATCTAAGAA
TAATGAATTACTTACTTCCCTCACATACGACGAAGACACTTATCCCTTAAATAATCTTGAGATAACTAATATCAATTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4KI24

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.809

99.242

0.742
  ssb Staphylococcus aureus MW2

74.046

99.242

0.735