Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   Q2T90_RS02540 Genome accession   NZ_CP130489
Coordinates   498255..498884 (-) Length   209 a.a.
NCBI ID   WP_103166668.1    Uniprot ID   A0A2K4DM94
Organism   Staphylococcus devriesei strain GYZ2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 493255..503884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2T90_RS02510 (Q2T90_02510) - 493833..494366 (-) 534 WP_103166674.1 acyl-CoA thioesterase -
  Q2T90_RS02515 (Q2T90_02515) - 494404..495651 (-) 1248 WP_107506345.1 aminopeptidase -
  Q2T90_RS02520 (Q2T90_02520) - 495664..495870 (-) 207 WP_103166672.1 DUF1128 domain-containing protein -
  Q2T90_RS02525 (Q2T90_02525) - 496013..496477 (+) 465 WP_103166671.1 low molecular weight protein-tyrosine-phosphatase -
  Q2T90_RS02530 (Q2T90_02530) - 496483..496767 (+) 285 WP_103166670.1 YtxH domain-containing protein -
  Q2T90_RS02535 (Q2T90_02535) - 496866..498092 (+) 1227 WP_103166669.1 YihY/virulence factor BrkB family protein -
  Q2T90_RS02540 (Q2T90_02540) vraR 498255..498884 (-) 630 WP_103166668.1 response regulator transcription factor Regulator
  Q2T90_RS02545 (Q2T90_02545) vraS 498874..499920 (-) 1047 WP_107506124.1 sensor histidine kinase Regulator
  Q2T90_RS02550 (Q2T90_02550) liaF 499917..500618 (-) 702 WP_103166666.1 cell wall-active antibiotics response protein LiaF -
  Q2T90_RS02555 (Q2T90_02555) - 500647..500961 (-) 315 WP_241956780.1 hypothetical protein -
  Q2T90_RS02560 (Q2T90_02560) map 501221..501973 (-) 753 WP_107506122.1 type I methionyl aminopeptidase -
  Q2T90_RS02565 (Q2T90_02565) - 502122..503111 (+) 990 WP_107506121.1 aromatic acid exporter family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23605.28 Da        Isoelectric Point: 4.8838

>NTDB_id=858585 Q2T90_RS02540 WP_103166668.1 498255..498884(-) (vraR) [Staphylococcus devriesei strain GYZ2]
MAIKVLFVDDHEMVRIGISSYLSTQSDIEIVGEGESGKDAIAKAHELQPDLILMDLLMEDMDGVEATMQIKKDLPHIKVV
MLTSFIEDKEVYRALDAGVDSYILKTTSASGIADAVRKTYNDESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=858585 Q2T90_RS02540 WP_103166668.1 498255..498884(-) (vraR) [Staphylococcus devriesei strain GYZ2]
ATGGCGATTAAAGTGTTATTTGTAGATGACCATGAAATGGTTAGAATTGGAATTTCAAGTTATTTATCAACGCAATCAGA
TATTGAAATCGTAGGAGAAGGTGAATCGGGAAAAGACGCCATAGCCAAGGCACATGAATTACAACCTGATTTAATTTTAA
TGGATTTATTAATGGAAGATATGGATGGCGTTGAGGCTACAATGCAAATAAAAAAAGATTTGCCACATATAAAAGTAGTC
ATGTTAACAAGTTTTATTGAAGATAAAGAAGTTTATAGAGCCCTGGATGCAGGAGTAGATAGCTATATTTTAAAAACAAC
AAGTGCGAGTGGCATAGCCGATGCTGTACGTAAGACCTATAATGATGAATCAGTCTTCGAACCTGAAGTGCTAGTCAAAA
TGCGTAACAGAATGAAAAAACGCGCTGAATTATATGAAATGTTAACTGAGCGTGAGATGGAAATTTTACTATTAATTGCT
AAAGGATATTCTAACCAAGAAATCGCAAGCGCATCTCATATTACAATCAAAACAGTTAAAACACACGTAAGTAATATATT
AAGTAAATTAGAAGTACAAGATAGAACACAAGCAGTTATTTATGCATTCCAACATAACTTAATTCAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K4DM94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

93.78

100

0.938