Detailed information NTG0085851

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LYSHEL_RS03910
• Genome accession: NZ_AP024546
• Coordinates: 775030..776472 (+)
• Length: 480 a.a.
• NCBI ID: WP_213435858.1
• Uniprot ID: -
• Organism: Lysobacter helvus strain JCM32364
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 770030..781472

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LYSHEL_RS03895 (LYSHEL_07600)	sucD	771124..771999 (-)	876	WP_213435852.1	succinate--CoA ligase subunit alpha	-
LYSHEL_RS03900 (LYSHEL_07610)	sucC	772011..773177 (-)	1167	WP_213435854.1	ADP-forming succinate--CoA ligase subunit beta	-
LYSHEL_RS03905 (LYSHEL_07620)	-	773376..774965 (+)	1590	WP_244858656.1	ATP-binding protein	-
LYSHEL_RS03910 (LYSHEL_07630)	pilR	775030..776472 (+)	1443	WP_213435858.1	sigma-54 dependent transcriptional regulator	Regulator
LYSHEL_RS03915 (LYSHEL_07640)	-	776688..777143 (+)	456	WP_213435860.1	pilin	-
LYSHEL_RS03920 (LYSHEL_07650)	-	777422..777877 (+)	456	WP_213435862.1	pilin	-
LYSHEL_RS03925 (LYSHEL_07660)	-	777967..779910 (+)	1944	WP_213435863.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 480 a.a.
• Molecular weight: 51967.75 Da
• Isoelectric Point: 6.7102

>NTDB_id=85851 LYSHEL_RS03910 WP_213435858.1 775030..776472(+) (pilR) [Lysobacter helvus strain JCM32364]
MNDQRSALIVDDERDIRELLVLTLGRMGLRTETASSLGEARALLAAHRFDLCLTDMRLPDGSGIDLIGEITQQYPNTPVA
MITAFGNVDAAVEALKAGAFDFVSKPVDLAVLRGLVKHALDLPQKGSKRSASIAAASDVLATRLFGDSPAIVALKATLGK
VARSQAPVYIAGESGVGKELVARTIHEQGARGAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAADGGTL
FLDEVAELPLPMQVKLLRAIQEKSIRPVGANAEVLVDVRILSATHKDLGALVNEGRFRHDLYYRINVIELRVPPLRERRD
DLPGLADAILRRLSGAQGRHLPALSADAVDALRTYPFPGNVRELENILERAMALAEGDVIELADLRLPVWGPAMTTPAQP
GAREPVREAPLMREPMTRDPRTTDPRDSMTSALPSYIEEIERNAIQQALEDNRYNKTKAAAALGITFRALRYKLKKLGID

Nucleotide

• Length: 1443 bp

>NTDB_id=85851 LYSHEL_RS03910 WP_213435858.1 775030..776472(+) (pilR) [Lysobacter helvus strain JCM32364]
ATGAACGACCAGCGCAGTGCATTGATCGTCGACGACGAGCGCGACATCCGCGAATTGCTGGTGCTCACGCTGGGTCGCAT
GGGCTTGCGCACCGAAACCGCGTCGAGCCTCGGCGAGGCGCGCGCGTTGCTCGCGGCGCACCGCTTCGACCTGTGCCTCA
CCGACATGCGCCTGCCCGACGGCTCGGGCATCGACCTAATCGGCGAAATCACGCAGCAATACCCCAACACGCCGGTCGCG
ATGATCACCGCGTTCGGCAACGTCGACGCCGCGGTGGAAGCCCTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCCGT
GGACCTGGCCGTGTTGCGCGGCCTGGTGAAGCACGCGCTGGATCTTCCGCAGAAAGGCAGCAAGCGCAGCGCGAGCATCG
CGGCGGCAAGCGACGTGCTGGCAACGCGCCTGTTCGGCGACTCGCCCGCCATCGTCGCGCTCAAGGCCACGCTCGGCAAA
GTCGCGCGCAGCCAGGCGCCGGTGTACATCGCCGGCGAATCGGGCGTGGGCAAGGAACTCGTCGCGCGCACCATCCACGA
ACAGGGCGCACGCGGCGCAGGTCCCTTCGTGCCGGTCAACTGCGGTGCGATTCCCGCCGAACTGATGGAGAGCGAATTCT
TCGGACACAAGAAGGGGTCGTTCACCGGCGCGCACGCGGACAAGCCCGGCCTGTTCCAGGCCGCCGACGGCGGCACCTTG
TTCCTCGACGAAGTCGCCGAGCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGATCCGCCC
CGTCGGCGCGAACGCCGAAGTCCTCGTCGACGTGCGCATCCTCTCGGCCACGCACAAGGATCTCGGCGCGCTCGTCAACG
AAGGCCGCTTCCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCCGCGAC
GACCTGCCGGGCCTGGCCGATGCGATCCTGCGTCGCCTCTCCGGCGCGCAGGGCCGCCACCTGCCCGCGCTCAGCGCGGA
CGCGGTGGATGCGCTGCGCACCTATCCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCGATGGCGC
TGGCCGAAGGCGACGTCATCGAACTCGCGGACCTGCGCCTGCCCGTCTGGGGCCCGGCGATGACCACGCCGGCGCAGCCC
GGCGCGCGCGAACCGGTGCGCGAAGCCCCGCTGATGCGCGAACCGATGACGCGCGATCCGCGCACCACCGATCCGCGCGA
CAGCATGACCAGCGCGTTGCCGAGCTACATCGAAGAGATCGAACGCAACGCGATCCAGCAGGCGCTCGAAGACAATCGCT
ACAACAAGACCAAGGCCGCCGCGGCCCTCGGGATCACCTTCCGGGCCCTGCGCTACAAGCTCAAGAAGCTCGGCATCGAC
TGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (437-477)

• Response regulator receiver domain (Response_reg) (8-114)

• Sigma-54 interaction domain (Sigma54_activat) (145-310)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.006	99.375	0.606
pilR	Acinetobacter baumannii strain A118	47.569	98.542	0.469