Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   Q3O39_RS07840 Genome accession   NZ_CP130475
Coordinates   1496023..1496358 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM126726     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1491023..1501358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3O39_RS07790 (Q3O39_07790) comGC 1491255..1491521 (+) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  Q3O39_RS07795 (Q3O39_07795) comGD 1491511..1491948 (+) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  Q3O39_RS07800 (Q3O39_07800) comGE 1491932..1492246 (+) 315 WP_032874016.1 competence type IV pilus minor pilin ComGE Machinery gene
  Q3O39_RS07805 (Q3O39_07805) comGF 1492191..1492655 (+) 465 WP_223813077.1 competence type IV pilus minor pilin ComGF -
  Q3O39_RS07810 (Q3O39_07810) comGG 1492656..1493033 (+) 378 WP_032874019.1 competence type IV pilus minor pilin ComGG Machinery gene
  Q3O39_RS07815 (Q3O39_07815) - 1493090..1493269 (+) 180 WP_022552966.1 YqzE family protein -
  Q3O39_RS07820 (Q3O39_07820) - 1493310..1493639 (-) 330 WP_032874021.1 DUF3889 domain-containing protein -
  Q3O39_RS07825 (Q3O39_07825) tapA 1493898..1494569 (+) 672 WP_032874023.1 amyloid fiber anchoring/assembly protein TapA -
  Q3O39_RS07830 (Q3O39_07830) sipW 1494541..1495125 (+) 585 WP_032874025.1 signal peptidase I SipW -
  Q3O39_RS07835 (Q3O39_07835) tasA 1495190..1495975 (+) 786 WP_032874027.1 biofilm matrix protein TasA -
  Q3O39_RS07840 (Q3O39_07840) sinR 1496023..1496358 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  Q3O39_RS07845 (Q3O39_07845) sinI 1496392..1496565 (-) 174 WP_032874029.1 anti-repressor SinI Regulator
  Q3O39_RS07850 (Q3O39_07850) - 1496742..1497536 (-) 795 WP_007612541.1 YqhG family protein -
  Q3O39_RS07855 (Q3O39_07855) - 1497558..1499228 (-) 1671 WP_032874031.1 DEAD/DEAH box helicase -
  Q3O39_RS07860 (Q3O39_07860) gcvT 1499651..1500751 (+) 1101 WP_032874033.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=858459 Q3O39_RS07840 WP_003153104.1 1496023..1496358(-) (sinR) [Bacillus velezensis strain SRCM126726]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=858459 Q3O39_RS07840 WP_003153104.1 1496023..1496358(-) (sinR) [Bacillus velezensis strain SRCM126726]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991