Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   Q3B96_RS02360 Genome accession   NZ_CP130465
Coordinates   405898..406191 (-) Length   97 a.a.
NCBI ID   WP_003183466.1    Uniprot ID   -
Organism   Bacillus licheniformis strain MGMM9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 400898..411191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3B96_RS02315 (Q3B96_02315) tasA 401280..402074 (-) 795 WP_003183447.1 biofilm matrix protein TasA -
  Q3B96_RS02320 (Q3B96_02320) sipW 402148..402732 (-) 585 WP_003183449.1 signal peptidase I SipW -
  Q3B96_RS02325 (Q3B96_02325) tapA 402729..403457 (-) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  Q3B96_RS02330 (Q3B96_02330) - 403767..404054 (+) 288 WP_223307118.1 YqzG/YhdC family protein -
  Q3B96_RS02335 (Q3B96_02335) - 404078..404260 (-) 183 WP_003183456.1 YqzE family protein -
  Q3B96_RS02340 (Q3B96_02340) comGG 404349..404714 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  Q3B96_RS02345 (Q3B96_02345) comGF 404727..405215 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  Q3B96_RS02350 (Q3B96_02350) comGE 405124..405471 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  Q3B96_RS02355 (Q3B96_02355) comGD 405455..405892 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  Q3B96_RS02360 (Q3B96_02360) comGC 405898..406191 (-) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  Q3B96_RS02365 (Q3B96_02365) comGB 406205..407239 (-) 1035 WP_011198115.1 competence type IV pilus assembly protein ComGB Machinery gene
  Q3B96_RS02370 (Q3B96_02370) comGA 407229..408293 (-) 1065 WP_003183477.1 competence type IV pilus ATPase ComGA Machinery gene
  Q3B96_RS02375 (Q3B96_02375) - 408450..409289 (-) 840 WP_003183480.1 STAS domain-containing protein -
  Q3B96_RS02385 (Q3B96_02385) - 409531..409908 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  Q3B96_RS02390 (Q3B96_02390) - 410117..410362 (+) 246 WP_003183483.1 DUF2626 domain-containing protein -
  Q3B96_RS02395 (Q3B96_02395) - 410400..411038 (-) 639 WP_003183485.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10725.62 Da        Isoelectric Point: 9.1200

>NTDB_id=858326 Q3B96_RS02360 WP_003183466.1 405898..406191(-) (comGC) [Bacillus licheniformis strain MGMM9]
MNEKGFTLIEMLVVMLVISILLLITIPNVTKHNQSIQKKGCEGLINMVQAQITAYQMDHDGKTPNRAELESEGYIKKNLK
CPNGKAIKISNGKAQAD

Nucleotide


Download         Length: 294 bp        

>NTDB_id=858326 Q3B96_RS02360 WP_003183466.1 405898..406191(-) (comGC) [Bacillus licheniformis strain MGMM9]
GTGAATGAAAAGGGATTTACACTGATAGAAATGTTAGTCGTCATGCTCGTTATCTCCATCCTGCTGTTGATCACCATTCC
GAATGTGACCAAGCATAACCAAAGCATCCAAAAGAAAGGATGCGAAGGATTAATCAATATGGTTCAAGCGCAGATCACGG
CCTATCAGATGGATCATGACGGGAAAACGCCGAACAGGGCGGAGCTTGAATCTGAAGGTTACATAAAAAAGAACTTAAAG
TGTCCGAATGGGAAAGCAATTAAAATTTCAAACGGCAAAGCACAGGCTGATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

44.211

97.938

0.433
  comGC Staphylococcus aureus N315

44.211

97.938

0.433