Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   Q3B96_RS02310 Genome accession   NZ_CP130465
Coordinates   400840..401175 (+) Length   111 a.a.
NCBI ID   WP_025804940.1    Uniprot ID   A0AB37GFT9
Organism   Bacillus licheniformis strain MGMM9     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 395840..406175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3B96_RS02290 (Q3B96_02290) gcvT 396272..397366 (-) 1095 WP_003183436.1 glycine cleavage system aminomethyltransferase GcvT -
  Q3B96_RS02295 (Q3B96_02295) - 397959..399638 (+) 1680 WP_003183439.1 DEAD/DEAH box helicase -
  Q3B96_RS02300 (Q3B96_02300) - 399645..400439 (+) 795 WP_003183441.1 YqhG family protein -
  Q3B96_RS02305 (Q3B96_02305) sinI 400630..400806 (+) 177 WP_003183444.1 anti-repressor SinI Regulator
  Q3B96_RS02310 (Q3B96_02310) sinR 400840..401175 (+) 336 WP_025804940.1 transcriptional regulator SinR Regulator
  Q3B96_RS02315 (Q3B96_02315) tasA 401280..402074 (-) 795 WP_003183447.1 biofilm matrix protein TasA -
  Q3B96_RS02320 (Q3B96_02320) sipW 402148..402732 (-) 585 WP_003183449.1 signal peptidase I SipW -
  Q3B96_RS02325 (Q3B96_02325) tapA 402729..403457 (-) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  Q3B96_RS02330 (Q3B96_02330) - 403767..404054 (+) 288 WP_223307118.1 YqzG/YhdC family protein -
  Q3B96_RS02335 (Q3B96_02335) - 404078..404260 (-) 183 WP_003183456.1 YqzE family protein -
  Q3B96_RS02340 (Q3B96_02340) comGG 404349..404714 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  Q3B96_RS02345 (Q3B96_02345) comGF 404727..405215 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  Q3B96_RS02350 (Q3B96_02350) comGE 405124..405471 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  Q3B96_RS02355 (Q3B96_02355) comGD 405455..405892 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12991.60 Da        Isoelectric Point: 5.9495

>NTDB_id=858325 Q3B96_RS02310 WP_025804940.1 400840..401175(+) (sinR) [Bacillus licheniformis strain MGMM9]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKRRQEKE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=858325 Q3B96_RS02310 WP_025804940.1 400840..401175(+) (sinR) [Bacillus licheniformis strain MGMM9]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAGAAG
ACAGGAAAAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928