Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   WAZ83_RS05315 Genome accession   NZ_CP147059
Coordinates   1067202..1067858 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain JKHS016     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1062202..1072858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAZ83_RS05280 (WAZ83_05285) dcyD 1063082..1064068 (+) 987 WP_001128219.1 D-cysteine desulfhydrase -
  WAZ83_RS05285 (WAZ83_05290) tcyL 1064083..1064751 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  WAZ83_RS05290 (WAZ83_05295) tcyN 1064748..1065500 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  WAZ83_RS05295 (WAZ83_05300) sdiA 1065730..1066452 (+) 723 WP_001154276.1 transcriptional regulator SdiA -
  WAZ83_RS05300 (WAZ83_05305) yecF 1066519..1066743 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  WAZ83_RS05305 (WAZ83_05310) yecU 1066730..1066906 (-) 177 WP_000590347.1 protein YecU -
  WAZ83_RS05310 (WAZ83_05315) - 1066989..1067060 (-) 72 Protein_1034 transcriptional regulator -
  WAZ83_RS05315 (WAZ83_05320) letA 1067202..1067858 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  WAZ83_RS05320 (WAZ83_05325) uvrC 1067855..1069687 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  WAZ83_RS05325 (WAZ83_05330) pgsA 1069744..1070292 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WAZ83_RS05345 (WAZ83_05350) yecA 1070941..1071606 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=858305 WAZ83_RS05315 WP_000611335.1 1067202..1067858(+) (letA) [Escherichia coli strain JKHS016]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=858305 WAZ83_RS05315 WP_000611335.1 1067202..1067858(+) (letA) [Escherichia coli strain JKHS016]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486