Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   Q3O83_RS01965 Genome accession   NZ_CP130445
Coordinates   382902..383855 (+) Length   317 a.a.
NCBI ID   WP_046559346.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain C6.7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 377902..388855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3O83_RS01940 (Q3O83_01940) - 377946..379379 (+) 1434 WP_161503399.1 HAMP domain-containing sensor histidine kinase -
  Q3O83_RS01945 (Q3O83_01945) rapC 379532..380680 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  Q3O83_RS01950 (Q3O83_01950) phrC 380664..380783 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  Q3O83_RS01955 (Q3O83_01955) - 380933..381028 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  Q3O83_RS01960 (Q3O83_01960) - 381123..382487 (-) 1365 WP_014304341.1 aspartate kinase -
  Q3O83_RS01965 (Q3O83_01965) ceuB 382902..383855 (+) 954 WP_046559346.1 ABC transporter permease Machinery gene
  Q3O83_RS01970 (Q3O83_01970) - 383845..384792 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  Q3O83_RS01975 (Q3O83_01975) - 384786..385544 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  Q3O83_RS01980 (Q3O83_01980) - 385566..386510 (+) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  Q3O83_RS01985 (Q3O83_01985) - 386552..387973 (-) 1422 WP_014304342.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=858183 Q3O83_RS01965 WP_046559346.1 382902..383855(+) (ceuB) [Bacillus amyloliquefaciens strain C6.7]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMIFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=858183 Q3O83_RS01965 WP_046559346.1 382902..383855(+) (ceuB) [Bacillus amyloliquefaciens strain C6.7]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGATTTTTACGTCAGCGAGCCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTTAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533