Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3B99_RS08940 Genome accession   NZ_CP130437
Coordinates   1858427..1858945 (+) Length   172 a.a.
NCBI ID   WP_011254001.1    Uniprot ID   -
Organism   Lactobacillus acidophilus strain ATCC 9224     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1853427..1863945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3B99_RS08925 gyrB 1853435..1855399 (+) 1965 WP_003549374.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  Q3B99_RS08930 gyrA 1855410..1857884 (+) 2475 WP_003549372.1 DNA gyrase subunit A -
  Q3B99_RS08935 rpsF 1858085..1858381 (+) 297 WP_003549370.1 30S ribosomal protein S6 -
  Q3B99_RS08940 ssb 1858427..1858945 (+) 519 WP_011254001.1 single-stranded DNA-binding protein Machinery gene
  Q3B99_RS08945 rpsR 1858974..1859210 (+) 237 WP_003549366.1 30S ribosomal protein S18 -
  Q3B99_RS08950 - 1859389..1861410 (+) 2022 WP_003549345.1 DHH family phosphoesterase -
  Q3B99_RS08955 rplI 1861423..1861878 (+) 456 WP_003549343.1 50S ribosomal protein L9 -
  Q3B99_RS08960 dnaB 1861904..1863298 (+) 1395 WP_003549341.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18829.48 Da        Isoelectric Point: 4.7317

>NTDB_id=858171 Q3B99_RS08940 WP_011254001.1 1858427..1858945(+) (ssb) [Lactobacillus acidophilus strain ATCC 9224]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFSLLESRKDREARGQSGGYTPNNGNINNQPANNFQNNGGSQNNPQINNNQSSSQDPFAGSG
DTIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=858171 Q3B99_RS08940 WP_011254001.1 1858427..1858945(+) (ssb) [Lactobacillus acidophilus strain ATCC 9224]
ATGATTAATAGAGTTGTACTTGTTGGCCGATTAACACGTGATCCTGAATTGCGTACTACTGGAAGTGGAATTTCGGTAGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGTCAGGGTGAGAGAGGCGCAGACTTTATCAGCTGTGTAATCT
GGAGAAAGGCTGCGGAAAACTTCTGTAACTTTACTTCAAAAGGTTCATTAGTTGGTATTGATGGCCGTATTCAAACCAGA
AGCTATGACAATAAAGATGGGCAACGAGTATATGTAACTGAAGTTGTTGTTGATAACTTCTCATTACTTGAATCACGTAA
GGATCGTGAAGCCCGCGGTCAAAGTGGTGGATATACACCAAATAATGGAAATATTAACAATCAACCTGCTAATAATTTCC
AAAATAATGGTGGATCACAAAATAATCCACAGATTAATAACAATCAAAGTTCTTCACAAGATCCATTTGCTGGATCAGGT
GATACTATTGATATTTCTGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.857

100

0.64
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.056

100

0.57