Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3B98_RS02985 Genome accession   NZ_CP130436
Coordinates   556796..557314 (-) Length   172 a.a.
NCBI ID   WP_011254001.1    Uniprot ID   -
Organism   Lactobacillus acidophilus strain ATCC 53544     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 551796..562314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3B98_RS02965 dnaB 552443..553837 (-) 1395 WP_003549341.1 replicative DNA helicase -
  Q3B98_RS02970 rplI 553863..554318 (-) 456 WP_003549343.1 50S ribosomal protein L9 -
  Q3B98_RS02975 - 554331..556352 (-) 2022 WP_003549345.1 DHH family phosphoesterase -
  Q3B98_RS02980 rpsR 556531..556767 (-) 237 WP_003549366.1 30S ribosomal protein S18 -
  Q3B98_RS02985 ssb 556796..557314 (-) 519 WP_011254001.1 single-stranded DNA-binding protein Machinery gene
  Q3B98_RS02990 rpsF 557360..557656 (-) 297 WP_003549370.1 30S ribosomal protein S6 -
  Q3B98_RS02995 gyrA 557857..560331 (-) 2475 WP_003549372.1 DNA gyrase subunit A -
  Q3B98_RS03000 gyrB 560342..562306 (-) 1965 WP_003549374.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18829.48 Da        Isoelectric Point: 4.7317

>NTDB_id=858146 Q3B98_RS02985 WP_011254001.1 556796..557314(-) (ssb) [Lactobacillus acidophilus strain ATCC 53544]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFSLLESRKDREARGQSGGYTPNNGNINNQPANNFQNNGGSQNNPQINNNQSSSQDPFAGSG
DTIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=858146 Q3B98_RS02985 WP_011254001.1 556796..557314(-) (ssb) [Lactobacillus acidophilus strain ATCC 53544]
ATGATTAATAGAGTTGTACTTGTTGGCCGATTAACACGTGATCCTGAATTGCGTACTACTGGAAGTGGAATTTCGGTAGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGTCAGGGTGAGAGAGGCGCAGACTTTATCAGCTGTGTAATCT
GGAGAAAGGCTGCGGAAAACTTCTGTAACTTTACTTCAAAAGGTTCATTAGTTGGTATTGATGGCCGTATTCAAACCAGA
AGCTATGACAATAAAGATGGGCAACGAGTATATGTAACTGAAGTTGTTGTTGATAACTTCTCATTACTTGAATCACGTAA
GGATCGTGAAGCCCGCGGTCAAAGTGGTGGATATACACCAAATAATGGAAATATTAACAATCAACCTGCTAATAATTTCC
AAAATAATGGTGGATCACAAAATAATCCACAGATTAATAACAATCAAAGTTCTTCACAAGATCCATTTGCTGGATCAGGT
GATACTATTGATATTTCTGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.857

100

0.64
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.056

100

0.57