Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   I0P84_RS02580 Genome accession   NZ_AP024524
Coordinates   535118..535975 (+) Length   285 a.a.
NCBI ID   WP_214002292.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain RYU24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 530118..540975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0P84_RS02555 (RYU24_04960) wrbA 531163..531759 (+) 597 WP_208461908.1 NAD(P)H:quinone oxidoreductase -
  I0P84_RS02560 (RYU24_04970) - 531811..532236 (-) 426 WP_175966107.1 hypothetical protein -
  I0P84_RS02565 (RYU24_04980) - 532635..533210 (-) 576 WP_005233791.1 xanthine phosphoribosyltransferase -
  I0P84_RS02570 (RYU24_04990) - 533302..533961 (-) 660 WP_373686180.1 DUF3108 domain-containing protein -
  I0P84_RS02575 (RYU24_05000) - 534169..534855 (-) 687 WP_208461907.1 hypothetical protein -
  I0P84_RS02580 (RYU24_05010) tonB2 535118..535975 (+) 858 WP_214002292.1 energy transducer TonB Machinery gene
  I0P84_RS02585 (RYU24_05020) - 535972..536373 (-) 402 WP_208461905.1 hypothetical protein -
  I0P84_RS02590 (RYU24_05030) - 536594..536830 (-) 237 WP_214002293.1 antibiotic biosynthesis monooxygenase family protein -
  I0P84_RS02595 (RYU24_05040) ybeY 536923..537405 (-) 483 WP_214001900.1 rRNA maturation RNase YbeY -
  I0P84_RS02600 (RYU24_05050) - 537440..538516 (-) 1077 WP_175966097.1 PhoH family protein -
  I0P84_RS02605 (RYU24_05060) miaB 538555..540012 (-) 1458 WP_175966095.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32771.27 Da        Isoelectric Point: 6.8940

>NTDB_id=85801 I0P84_RS02580 WP_214002292.1 535118..535975(+) (tonB2) [Acinetobacter variabilis strain RYU24]
MPLVKAWWKDPIFNSAVFAAVILHVIFLTLKFGMPQDQESMTKEIAVSIRQTDEKIEHADFLAQTDQQGSGKFREVHRMS
SDMPAPLMEQKTGEEQQESPDMLQQQRELSFEEKVLMTTLSWQKQAEENQRKKMQEQLQSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQSKQDVSAAYLEKFRQKVEFYGNRYYPDAAKQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHSLL
DEAAKSSVRKAAPFGAFDAKMSDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=85801 I0P84_RS02580 WP_214002292.1 535118..535975(+) (tonB2) [Acinetobacter variabilis strain RYU24]
ATGCCTCTGGTCAAAGCCTGGTGGAAAGATCCAATTTTTAATAGCGCCGTATTTGCAGCTGTTATTTTGCATGTGATTTT
TCTCACGCTGAAATTTGGTATGCCACAAGATCAGGAGAGCATGACTAAAGAAATTGCAGTCAGTATTCGTCAAACTGATG
AAAAAATTGAGCATGCAGATTTTCTGGCTCAAACTGACCAGCAAGGTTCAGGTAAATTTCGTGAAGTACATCGTATGTCG
AGCGATATGCCTGCACCGTTGATGGAGCAAAAGACCGGAGAAGAGCAGCAAGAAAGTCCGGACATGTTGCAACAGCAGCG
CGAATTAAGCTTTGAAGAAAAAGTACTGATGACGACTTTAAGCTGGCAAAAACAGGCAGAAGAAAATCAGCGCAAAAAAA
TGCAGGAACAGTTACAAAGTCAGTTTCAGGCCAAAGCCGCTATGGTAGCCAGTCTTGAAGCCCAATATCTGCAACGACAA
CAAAACTTCAGTCGTCAGCAAAAAATTAAAACCGTAGATGGTATCCAGTCCAAACAGGATGTCTCTGCTGCTTATCTGGA
AAAATTCCGTCAAAAAGTGGAGTTCTATGGTAACCGCTATTATCCAGACGCGGCCAAACAGCAGAATCTGGCAGGAGAGG
TGCGTTTGATGGTGATCTTAAACCAGAACGGCGGAATCCGTGCAATTCGCTTAATTGACAGTTCAGGGCATAGCTTGCTA
GATGAAGCTGCAAAATCTTCAGTACGCAAGGCAGCACCGTTCGGAGCATTTGATGCCAAGATGTCGGATATTTCCGAGTT
ACGAATCATTCGAACCTGGCGTTTTGATCCGGCTGAAGCGGAGTTTGAGGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.477

97.895

0.719

Multiple sequence alignment