Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I0P84_RS02225 Genome accession   NZ_AP024524
Coordinates   476767..477402 (-) Length   211 a.a.
NCBI ID   WP_214001887.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain RYU24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 471767..482402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0P84_RS02190 (RYU24_04270) mlaE 471818..472597 (+) 780 WP_214001882.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  I0P84_RS02195 (RYU24_04280) - 472597..473274 (+) 678 WP_214001883.1 outer membrane lipid asymmetry maintenance protein MlaD -
  I0P84_RS02200 (RYU24_04290) - 473293..473928 (+) 636 WP_004786965.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  I0P84_RS02205 (RYU24_04300) - 473941..474231 (+) 291 WP_214001884.1 STAS domain-containing protein -
  I0P84_RS02210 (RYU24_04310) - 474579..475592 (-) 1014 WP_004786961.1 CorA family divalent cation transporter -
  I0P84_RS02215 (RYU24_04320) - 475745..476335 (+) 591 WP_214001885.1 TIGR00730 family Rossman fold protein -
  I0P84_RS02220 (RYU24_04330) - 476364..476765 (+) 402 WP_214001886.1 NUDIX hydrolase -
  I0P84_RS02225 (RYU24_04340) comF 476767..477402 (-) 636 WP_214001887.1 ComF family protein Machinery gene
  I0P84_RS02230 (RYU24_04350) recG 477389..479434 (-) 2046 WP_214001888.1 ATP-dependent DNA helicase RecG -
  I0P84_RS02235 (RYU24_04360) - 479468..480280 (+) 813 WP_214001889.1 NAD(P)H-binding protein -
  I0P84_RS02240 (RYU24_04370) - 480516..481667 (+) 1152 WP_004646736.1 IS4-like element ISAbe18 family transposase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24454.69 Da        Isoelectric Point: 9.4181

>NTDB_id=85799 I0P84_RS02225 WP_214001887.1 476767..477402(-) (comF) [Acinetobacter variabilis strain RYU24]
MPMFKLLQQGKLWLNRLQPCQLCQTDYQNLHSVCQDCWQQLPWAHQTIQRQEMQFQVACEYAYPIDRLIQLFKYEQKLHL
EPLLAGALLTLKFPKVSAVVPMPISTERLVERGYNQSLLLAKHVAKHLQVPVWQPIERLKQHSQKGLSRLERIEDIEAQF
RVTTSSKVRYRKVLIIDDVVTTGSSIRALSQQMEKLGCQQIYAACLAGAKL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=85799 I0P84_RS02225 WP_214001887.1 476767..477402(-) (comF) [Acinetobacter variabilis strain RYU24]
ATGCCTATGTTTAAGCTGCTCCAACAGGGAAAACTCTGGCTGAATCGTTTACAGCCTTGTCAGCTGTGCCAGACAGATTA
TCAAAACCTGCATTCTGTCTGTCAGGATTGCTGGCAACAGTTACCTTGGGCACATCAGACCATTCAGCGTCAGGAAATGC
AGTTTCAGGTGGCGTGTGAATATGCGTACCCAATCGATCGCCTGATTCAATTATTTAAATATGAACAAAAGCTGCATCTG
GAACCTTTATTGGCAGGTGCGTTACTGACCTTAAAATTTCCTAAAGTCAGTGCAGTGGTTCCTATGCCGATTTCAACCGA
ACGGCTGGTCGAACGTGGCTACAATCAATCCCTATTACTGGCCAAGCATGTTGCCAAACACTTACAAGTTCCCGTCTGGC
AGCCCATTGAACGACTCAAGCAACATTCACAAAAAGGTTTAAGCCGTCTGGAACGTATCGAAGATATTGAAGCCCAATTC
AGGGTCACTACCTCTTCAAAAGTTCGTTATCGTAAGGTTCTGATTATCGATGATGTGGTTACGACTGGCAGCTCGATTCG
AGCTTTAAGCCAGCAAATGGAAAAACTGGGCTGCCAGCAGATTTACGCCGCTTGTCTGGCAGGAGCCAAACTTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.353

98.104

0.602
  comF Acinetobacter baumannii D1279779

60.87

98.104

0.597

Multiple sequence alignment