Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   QYY55_RS14580 Genome accession   NZ_CP130331
Coordinates   2952523..2952855 (-) Length   110 a.a.
NCBI ID   WP_069481955.1    Uniprot ID   A0A1E4R964
Organism   Lysinibacillus fusiformis strain MGMM7     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2947523..2957855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYY55_RS14550 (QYY55_14525) gcvPA 2947660..2949006 (-) 1347 WP_375134608.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QYY55_RS14555 (QYY55_14530) gcvT 2949032..2950135 (-) 1104 WP_375134609.1 glycine cleavage system aminomethyltransferase GcvT -
  QYY55_RS14560 (QYY55_14535) - 2950638..2951153 (-) 516 WP_375134610.1 shikimate kinase -
  QYY55_RS14565 (QYY55_14540) comGF 2951352..2951780 (-) 429 WP_069481952.1 competence type IV pilus minor pilin ComGF -
  QYY55_RS14570 (QYY55_14545) - 2951773..2952090 (-) 318 WP_291757257.1 hypothetical protein -
  QYY55_RS14575 (QYY55_14550) comGD 2952083..2952523 (-) 441 WP_258268957.1 competence type IV pilus minor pilin ComGD -
  QYY55_RS14580 (QYY55_14555) comGC 2952523..2952855 (-) 333 WP_069481955.1 competence type IV pilus major pilin ComGC Machinery gene
  QYY55_RS14585 (QYY55_14560) comGB 2952866..2953939 (-) 1074 WP_258268956.1 competence type IV pilus assembly protein ComGB -
  QYY55_RS14590 (QYY55_14565) - 2953914..2954516 (-) 603 Protein_2896 ATPase, T2SS/T4P/T4SS family -
  QYY55_RS14595 (QYY55_14570) - 2954708..2955418 (+) 711 WP_069481958.1 metalloregulator ArsR/SmtB family transcription factor -
  QYY55_RS14600 (QYY55_14575) - 2955536..2955778 (+) 243 WP_004231035.1 DUF2626 family protein -
  QYY55_RS14605 (QYY55_14580) - 2955836..2956480 (-) 645 WP_258268954.1 MBL fold metallo-hydrolase -
  QYY55_RS14610 (QYY55_14585) - 2956650..2956829 (+) 180 WP_031416957.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 12199.24 Da        Isoelectric Point: 4.4750

>NTDB_id=857931 QYY55_RS14580 WP_069481955.1 2952523..2952855(-) (comGC) [Lysinibacillus fusiformis strain MGMM7]
MKQIKQQNGFTLIEMLIVLLIISILILITIPNVTKHFATIDEKGCAAYINMVQGQVEAYRVDLMAYPTLEDLVKEGYLKE
NETTCPNKEEIVITTEGEVRLANVGAGTNG

Nucleotide


Download         Length: 333 bp        

>NTDB_id=857931 QYY55_RS14580 WP_069481955.1 2952523..2952855(-) (comGC) [Lysinibacillus fusiformis strain MGMM7]
ATGAAACAAATCAAACAACAAAATGGCTTTACTTTAATCGAAATGCTCATTGTTTTGTTAATCATTTCAATTCTTATTTT
AATCACAATTCCAAATGTTACGAAGCACTTTGCTACGATTGATGAGAAGGGCTGTGCTGCATATATTAATATGGTACAGG
GGCAAGTAGAAGCCTATAGAGTGGATCTTATGGCATATCCAACTCTGGAGGATTTAGTGAAAGAAGGATATTTGAAAGAA
AATGAAACAACTTGTCCTAATAAAGAAGAAATAGTTATTACTACTGAGGGAGAGGTACGCTTAGCAAATGTAGGTGCAGG
TACGAATGGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E4R964

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

54.082

89.091

0.482
  comGC Staphylococcus aureus MW2

45.263

86.364

0.391
  comGC Staphylococcus aureus N315

45.263

86.364

0.391