Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   Q3F87_RS04610 Genome accession   NZ_CP130328
Coordinates   766949..771466 (+) Length   1505 a.a.
NCBI ID   WP_180011984.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain TB2-2B     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 761949..776466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3F87_RS04585 (Q3F87_04585) - 762417..763061 (-) 645 WP_159123370.1 hypothetical protein -
  Q3F87_RS04590 (Q3F87_04590) pilG 763345..763728 (+) 384 WP_180011986.1 twitching motility response regulator PilG Regulator
  Q3F87_RS04595 (Q3F87_04595) - 763754..764122 (+) 369 WP_004784985.1 response regulator -
  Q3F87_RS04600 (Q3F87_04600) - 764128..764664 (+) 537 WP_159123371.1 chemotaxis protein CheW -
  Q3F87_RS04605 (Q3F87_04605) - 764711..766780 (+) 2070 WP_004784982.1 methyl-accepting chemotaxis protein -
  Q3F87_RS04610 (Q3F87_04610) chpA 766949..771466 (+) 4518 WP_180011984.1 Hpt domain-containing protein Regulator
  Q3F87_RS04615 (Q3F87_04615) - 771467..771925 (+) 459 WP_004784978.1 hypothetical protein -
  Q3F87_RS04620 (Q3F87_04620) dapE 771986..773122 (-) 1137 WP_004784977.1 succinyl-diaminopimelate desuccinylase -
  Q3F87_RS04625 (Q3F87_04625) - 773246..773395 (-) 150 WP_004784975.1 entericidin A/B family lipoprotein -
  Q3F87_RS04630 (Q3F87_04630) - 773511..774386 (-) 876 WP_004784973.1 DUF1853 family protein -
  Q3F87_RS04635 (Q3F87_04635) - 774475..774912 (+) 438 WP_125278257.1 YbaN family protein -
  Q3F87_RS04640 (Q3F87_04640) elsL 774909..775421 (+) 513 WP_159123377.1 cell wall-recycling L,D-carboxypeptidase ElsL -

Sequence


Protein


Download         Length: 1505 a.a.        Molecular weight: 168703.34 Da        Isoelectric Point: 4.2489

>NTDB_id=857886 Q3F87_RS04610 WP_180011984.1 766949..771466(+) (chpA) [Acinetobacter variabilis strain TB2-2B]
MKEILKNLVETTTLPEDSYLDQDAEILEIFVEEIEEIFVELNALFPEWLSDPAHQENLKTIRRHFHTLKGSGRMVGAKSA
GEIAWAVEDTLNRVLSGSIQLTPTIQQYAKAVLNIYQFILYPKFKQVQELDVDLRPVVLLGQQLQQQITPEPALEELLQL
ADSLTAEGQITGLELGDSAEDQDTTAAIEISTTEFELEEADSEDAARSDVEETVAIFIEEAEEHLETIAKFLRSENEKVQ
DYNALIRAIHTLRGSSSMAQIEEIFEASSKVEHLFKTLLQDEIASTSKETAVLIQYAEFVSDYLHLLRQGDSSKLAAVYA
TFERVWNDYGFAATETETVETQGLVTKLVELEIDLLLDAEFEFDKRAKVDYPEYIQALSEQAAELLAHTDNRAALGIHEF
TTDLKSAYDALLEKPVLLNSDYAYELFAQAHQEFIHLFDTLAAGQRVILNDDTQKTLSELAAFVQQDLEIFAEDNVPAEQ
VSEEISIPEAATTASIDFAALSQRIASDRQYIDSAETQRDFDEDLLNIFLEEADELLVGIDEDLNTWSKKQDDTTSLNNL
MRHLHTLKGGANMITASHIGSISHELESIYERIIRQQIAVTPALIQIIRLVQDNVSDRIQSIRDEGIDYPAVEAISILQN
IQALVAGQAVAAPVETSIPVVEFEYAEASADSEQTADEASEEIALEDTSSDLEPALNLEDEQVELTETETLTEPVEIVAE
ERSEEDELKSIVEETFLEESEEILDNTEKLLNQWFDQRSDRSLLLQLQRAAHSIKGGARMVENEKVASIAYELETTFEQF
AVYHFNSNAYDGLLQKTLAWLRQAIFQRDYSNFEQIQSSLKKIAYVDVTAQLPERLAKTETLVTENSFEFVEGDGTEPPR
MMGEWIDTGNTDTSHEMIRISADLVEKMIDLSGENAINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIA
KHGSENSRYADFDPLEMDQYSSLNQLSKSLAESASDLVDFKSTLSDKIRETEGLLLQQSRIQAEIQESLMRTRLVPFDRM
LPRLQRIVRQTSTTLNRPAELIIQNSEGELDRNILERLVTPFEHMLRNAIDHGLEDTADRIALNKPEVGSILLNISRQGT
DVIVSFSDDGKGIDAEKIREKALSQGLIKEDQTLDSEELLQFIFHPGFSTAKSVTQISGRGVGLDVVQSEIKSLGGHVSV
SSEVGKGTTFTIRVPTTVAVSDALMVKVGDQQYAVSLAQIDRIVRIAPSTLETYFNSKDDFFKIDGVNYKLRYLSEFVSN
QPIPRLNNVAHSLPVLLIKGNSGQTIALLVDQLVGSRAQIVVKPIGHQFANIGVVTGATILGDGQVCLILDGQNIARQIH
GTQRVKHMQDQRDGSRSGNARRLVMIVDDSVTVRKVTSRLLERQGYDIVTAKDGVDAIEQLENVRPDLMLLDIEMPRMDG
FEVTNLVRHHDIHRELPIIMITSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIQQLIAEKQGS

Nucleotide


Download         Length: 4518 bp        

>NTDB_id=857886 Q3F87_RS04610 WP_180011984.1 766949..771466(+) (chpA) [Acinetobacter variabilis strain TB2-2B]
ATGAAAGAAATATTAAAAAATTTAGTTGAAACGACAACGCTTCCTGAAGACAGTTATCTTGATCAAGATGCAGAAATTCT
TGAAATTTTTGTCGAGGAAATCGAAGAGATTTTCGTTGAGTTAAATGCTTTATTTCCAGAATGGTTGAGTGATCCGGCTC
ATCAGGAAAACCTGAAAACCATTCGCCGCCATTTTCATACCCTGAAAGGTTCAGGCCGTATGGTGGGGGCTAAATCTGCG
GGTGAAATTGCTTGGGCAGTGGAAGATACCTTAAATCGGGTACTTTCAGGCTCAATCCAGTTAACGCCTACAATTCAACA
GTATGCCAAAGCTGTACTGAATATTTACCAGTTTATTTTATATCCAAAATTCAAACAGGTGCAGGAACTCGATGTTGACC
TACGCCCAGTCGTGCTTTTAGGTCAGCAATTACAACAACAAATAACACCTGAACCGGCTTTAGAAGAACTCTTGCAACTA
GCAGACAGTCTGACTGCCGAGGGTCAGATCACAGGTCTTGAGCTAGGTGATTCGGCTGAAGATCAAGATACAACTGCAGC
AATAGAAATAAGCACAACAGAATTTGAGCTTGAAGAAGCTGATAGTGAAGATGCTGCACGTAGTGATGTAGAAGAAACCG
TGGCGATCTTTATCGAGGAAGCGGAAGAGCATCTCGAAACGATTGCCAAGTTCCTGCGTAGCGAAAATGAAAAAGTGCAG
GATTATAATGCATTGATTCGTGCTATTCATACTTTGCGCGGCAGTTCGTCCATGGCACAGATCGAAGAAATCTTCGAGGC
CAGCTCTAAAGTAGAACATCTGTTTAAAACACTGCTTCAGGATGAAATTGCATCCACCTCAAAAGAAACTGCTGTATTAA
TTCAGTATGCTGAATTTGTCAGCGACTATCTGCATTTGTTACGTCAGGGTGATAGCAGCAAACTGGCAGCAGTGTATGCG
ACTTTTGAGCGTGTCTGGAATGATTATGGCTTCGCAGCCACTGAAACGGAAACAGTTGAAACCCAAGGTCTGGTGACCAA
GCTGGTTGAACTGGAGATTGACCTGTTGCTGGATGCCGAATTTGAATTCGATAAACGGGCTAAAGTCGATTATCCGGAAT
ATATTCAGGCTTTAAGCGAGCAGGCTGCCGAGCTGCTTGCACATACAGATAACCGTGCCGCACTGGGTATTCATGAGTTT
ACGACAGATTTAAAATCTGCTTATGATGCCTTGCTGGAAAAACCGGTACTGCTGAATAGTGATTATGCTTATGAGCTGTT
TGCCCAGGCACATCAGGAATTCATTCATTTATTCGATACCCTGGCAGCAGGCCAGCGTGTCATTCTGAATGATGATACGC
AAAAAACCTTGAGTGAACTGGCTGCATTTGTACAGCAGGACCTGGAAATCTTTGCTGAAGACAATGTTCCTGCTGAACAA
GTATCAGAAGAAATTTCTATTCCTGAAGCTGCAACCACAGCCAGCATTGACTTCGCTGCTTTAAGCCAGCGTATTGCCTC
TGACCGCCAATACATCGACAGCGCAGAAACTCAGCGTGATTTCGATGAGGATCTACTGAATATCTTCCTGGAAGAAGCGG
ATGAATTACTGGTAGGTATTGATGAAGATCTGAATACCTGGAGTAAAAAGCAGGATGATACGACTTCACTGAATAACCTG
ATGCGTCACTTGCACACCTTAAAAGGTGGTGCAAACATGATTACCGCTTCTCATATCGGTTCGATTTCGCACGAACTAGA
AAGTATTTATGAGCGAATCATCCGTCAGCAGATCGCTGTTACTCCAGCGCTGATTCAAATCATTCGTCTGGTGCAAGATA
ACGTTTCTGACCGTATCCAGTCGATCCGTGATGAAGGTATCGATTATCCGGCTGTTGAAGCAATTTCGATTCTGCAAAAT
ATTCAGGCATTGGTGGCTGGTCAAGCTGTTGCAGCTCCGGTAGAAACATCGATTCCTGTTGTCGAATTTGAATATGCAGA
AGCTAGTGCTGATTCCGAACAAACAGCGGATGAAGCATCGGAAGAGATTGCATTAGAAGATACAAGTTCAGATCTAGAAC
CGGCCCTAAACTTAGAAGATGAACAAGTTGAGCTGACTGAAACAGAAACTTTGACTGAGCCAGTTGAAATTGTAGCAGAA
GAGCGCTCTGAAGAAGATGAACTGAAGTCAATTGTTGAAGAGACTTTCCTTGAAGAGTCAGAAGAGATTCTCGACAATAC
TGAAAAACTGCTGAACCAATGGTTTGATCAGCGTAGTGACCGTAGCTTATTGCTTCAATTACAACGTGCTGCCCACAGTA
TCAAGGGTGGTGCGCGCATGGTTGAAAACGAAAAGGTGGCCAGCATTGCGTATGAACTGGAAACCACTTTCGAGCAGTTT
GCGGTATATCACTTTAACTCGAATGCTTATGATGGCTTGCTGCAAAAAACACTGGCCTGGTTAAGACAAGCGATCTTCCA
GCGTGACTATAGCAATTTTGAACAGATCCAAAGCAGCCTGAAAAAGATTGCGTATGTGGATGTTACTGCGCAGCTGCCAG
AACGTCTGGCTAAAACAGAAACGCTGGTCACAGAAAATAGCTTCGAGTTTGTCGAAGGTGATGGTACTGAGCCACCACGT
ATGATGGGTGAGTGGATCGATACCGGTAATACCGATACCAGCCATGAGATGATCCGTATCTCTGCTGATCTGGTTGAGAA
GATGATCGACCTGTCAGGCGAGAATGCAATTAACCGTTCGCGTATCGAGATGGACTTAGGCCAACTTGGCAATACCCTGA
ACGAAATGGAACTGGCAATCAAACGTCTGGCGGACCAGTTGCGCCGAATGGAAGGTGAGCTGGAATCACAGATTATTGCC
AAACACGGTTCAGAAAACTCGCGTTATGCAGACTTTGACCCGCTGGAAATGGACCAATATTCGTCCCTGAACCAGTTGTC
CAAGTCGCTAGCGGAATCTGCTTCGGACTTGGTTGACTTCAAGAGCACCTTATCCGACAAGATTCGTGAAACTGAAGGTT
TGTTATTGCAACAATCACGGATTCAGGCCGAGATTCAGGAAAGCCTGATGCGTACCCGTCTGGTACCGTTTGACCGGATG
TTGCCACGTTTACAGCGTATCGTACGTCAGACTTCTACGACCTTGAACCGTCCAGCCGAACTGATTATTCAGAATAGTGA
AGGTGAATTAGACCGTAATATTCTGGAGCGTCTGGTAACGCCATTCGAGCATATGCTGCGTAATGCGATTGACCATGGTT
TGGAAGATACAGCAGATCGTATTGCCTTGAACAAACCGGAAGTCGGTTCAATCCTGTTAAATATCAGCCGTCAGGGTACA
GATGTCATCGTCTCATTTAGTGATGATGGTAAAGGTATTGATGCTGAGAAGATTCGTGAAAAAGCACTCAGCCAAGGCCT
GATCAAAGAAGATCAGACACTGGATTCGGAAGAGCTACTGCAATTCATTTTCCACCCAGGCTTCAGTACTGCTAAATCTG
TAACCCAGATTTCAGGTCGTGGTGTGGGTCTGGATGTAGTACAAAGCGAGATCAAGTCTCTGGGTGGTCACGTATCTGTC
AGCTCTGAAGTTGGCAAAGGCACAACCTTCACCATTCGCGTACCGACGACTGTAGCGGTCAGCGATGCCTTGATGGTAAA
AGTGGGCGATCAGCAATACGCCGTTTCTCTGGCGCAAATCGACCGTATTGTACGTATTGCACCATCTACTCTGGAAACTT
ACTTCAACAGTAAAGACGATTTCTTCAAGATTGATGGCGTCAATTACAAATTGCGTTACCTGTCTGAGTTCGTATCGAAT
CAGCCAATTCCTCGTCTGAACAACGTAGCGCATTCACTGCCAGTATTGCTGATTAAAGGCAACAGTGGTCAAACCATTGC
CTTACTTGTGGATCAGTTAGTAGGTTCACGTGCACAGATCGTGGTGAAACCAATCGGCCATCAGTTCGCCAATATTGGTG
TAGTCACTGGTGCGACGATTCTTGGTGATGGTCAGGTTTGTCTGATTCTGGATGGTCAGAATATTGCCCGTCAGATCCAT
GGTACGCAGCGTGTGAAACACATGCAGGATCAACGCGATGGTTCACGTTCTGGCAATGCTCGCCGTCTGGTAATGATCGT
GGATGACTCGGTGACTGTACGTAAGGTGACCTCGCGTCTACTTGAGCGTCAGGGCTATGATATAGTCACCGCCAAAGATG
GTGTAGATGCGATTGAGCAGCTTGAAAATGTCCGTCCGGATCTGATGCTGCTGGATATTGAAATGCCGCGTATGGATGGT
TTTGAGGTCACGAACCTGGTTCGTCACCACGATATTCACCGTGAACTGCCAATCATCATGATTACTTCACGTACTGGTGA
AAAACACCGTGAACGTGCTTTCAGTCTGGGCGTAACCCACTACATGGGCAAACCGTTCCAGGAAGCTGAATTACTGGCGA
ATATTCAACAGTTAATTGCTGAAAAACAGGGGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

60.761

100

0.615