Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Q3F87_RS03020 Genome accession   NZ_CP130328
Coordinates   452093..452728 (-) Length   211 a.a.
NCBI ID   WP_180011186.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain TB2-2B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 447093..457728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3F87_RS02985 (Q3F87_02985) mlaE 447385..448164 (+) 780 WP_004786970.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  Q3F87_RS02990 (Q3F87_02990) - 448164..448841 (+) 678 WP_179992763.1 outer membrane lipid asymmetry maintenance protein MlaD -
  Q3F87_RS02995 (Q3F87_02995) - 448860..449495 (+) 636 WP_004786965.1 phospholipid-binding protein MlaC -
  Q3F87_RS03000 (Q3F87_03000) - 449508..449798 (+) 291 WP_180011179.1 lipid asymmetry maintenance protein MlaB -
  Q3F87_RS03005 (Q3F87_03005) - 449905..450918 (-) 1014 WP_159122636.1 CorA family divalent cation transporter -
  Q3F87_RS03010 (Q3F87_03010) - 451071..451661 (+) 591 WP_180011182.1 TIGR00730 family Rossman fold protein -
  Q3F87_RS03015 (Q3F87_03015) - 451690..452091 (+) 402 WP_302700378.1 NUDIX domain-containing protein -
  Q3F87_RS03020 (Q3F87_03020) comF 452093..452728 (-) 636 WP_180011186.1 ComF family protein Machinery gene
  Q3F87_RS03025 (Q3F87_03025) recG 452715..454760 (-) 2046 WP_179992766.1 ATP-dependent DNA helicase RecG -
  Q3F87_RS03030 (Q3F87_03030) - 454794..455606 (+) 813 WP_179992767.1 NAD(P)H-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24463.74 Da        Isoelectric Point: 9.4108

>NTDB_id=857881 Q3F87_RS03020 WP_180011186.1 452093..452728(-) (comF) [Acinetobacter variabilis strain TB2-2B]
MPMFKLLQQGKLWLNRLQPCQLCQTDYQNLHSVCQDCWQKLPWTHQTIQHQEMQFQVACDYAYPMDRLIQLFKYEQKLHL
EPLLAGALLTLKFPKVSAVVPMPISTERLVERGYNQSLLLAKHVAKHLQVPVWQPIERLKQHSQKGLSRLERIEDIEAQF
RVTISSKVRYRKVLIIDDVVTTGSSIRALSQQLEKLGCQQIYAACLAGAKL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=857881 Q3F87_RS03020 WP_180011186.1 452093..452728(-) (comF) [Acinetobacter variabilis strain TB2-2B]
ATGCCTATGTTTAAGCTGTTACAACAGGGTAAACTCTGGCTGAATCGTTTACAGCCTTGTCAGCTGTGCCAGACAGATTA
TCAAAACCTGCATTCTGTCTGTCAGGATTGCTGGCAAAAGTTACCTTGGACACATCAGACTATTCAGCATCAGGAAATGC
AGTTTCAGGTGGCGTGTGACTATGCCTACCCGATGGATCGCCTGATTCAATTATTTAAATATGAGCAGAAGCTGCATCTG
GAACCATTATTGGCAGGTGCATTACTAACCTTAAAATTTCCTAAAGTCAGTGCAGTGGTTCCTATGCCGATTTCAACCGA
ACGACTGGTTGAACGTGGCTATAATCAATCTTTGTTGCTGGCCAAGCATGTAGCTAAACACTTGCAAGTTCCCGTCTGGC
AACCAATTGAACGACTCAAGCAACATTCACAAAAAGGCTTAAGCCGTCTGGAACGTATCGAAGATATTGAAGCCCAGTTC
AGGGTCACTATCTCTTCAAAAGTCCGTTATCGTAAGGTTTTAATTATTGATGATGTGGTTACGACTGGCAGCTCAATTCG
AGCTTTGAGCCAGCAACTGGAAAAACTGGGCTGTCAGCAGATTTATGCCGCCTGTCTGGCGGGAGCCAAACTTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

59.903

98.104

0.588
  comF Acinetobacter baumannii D1279779

59.42

98.104

0.583