Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   WAZ52_RS01220 Genome accession   NZ_CP147038
Coordinates   191094..191750 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain 21F61     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 186094..196750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAZ52_RS01185 (WAZ52_01185) dcyD 186974..187960 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  WAZ52_RS01190 (WAZ52_01190) tcyL 187975..188643 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  WAZ52_RS01195 (WAZ52_01195) tcyN 188640..189392 (+) 753 WP_001273007.1 L-cystine ABC transporter ATP-binding protein TcyN -
  WAZ52_RS01200 (WAZ52_01200) sdiA 189622..190344 (+) 723 WP_001154279.1 transcriptional regulator SdiA -
  WAZ52_RS01205 (WAZ52_01205) yecF 190411..190635 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  WAZ52_RS01210 (WAZ52_01210) yecU 190622..190798 (-) 177 WP_000590347.1 protein YecU -
  WAZ52_RS01215 (WAZ52_01215) - 190881..190952 (-) 72 Protein_193 transcriptional regulator -
  WAZ52_RS01220 (WAZ52_01220) letA 191094..191750 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  WAZ52_RS01225 (WAZ52_01225) uvrC 191747..193579 (+) 1833 WP_001283415.1 excinuclease ABC subunit UvrC Machinery gene
  WAZ52_RS01230 (WAZ52_01230) pgsA 193636..194184 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WAZ52_RS01250 (WAZ52_01250) yecA 194833..195498 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=857714 WAZ52_RS01220 WP_000611335.1 191094..191750(+) (letA) [Escherichia coli strain 21F61]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=857714 WAZ52_RS01220 WP_000611335.1 191094..191750(+) (letA) [Escherichia coli strain 21F61]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486