Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WAZ59_RS07875 Genome accession   NZ_CP147032
Coordinates   1479439..1480068 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 22F46     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1474439..1485068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAZ59_RS07860 (WAZ59_07860) helD 1474681..1476735 (-) 2055 WP_001515148.1 DNA helicase IV -
  WAZ59_RS07865 (WAZ59_07865) yccF 1476858..1477304 (+) 447 WP_001261235.1 YccF domain-containing protein -
  WAZ59_RS07870 (WAZ59_07870) yccS 1477314..1479476 (+) 2163 WP_072291935.1 YccS family putative transporter -
  WAZ59_RS07875 (WAZ59_07875) sxy/tfoX 1479439..1480068 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WAZ59_RS07880 (WAZ59_07880) sulA 1480287..1480796 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WAZ59_RS07885 (WAZ59_07885) ompA 1481153..1482193 (+) 1041 WP_000750416.1 porin OmpA -
  WAZ59_RS07890 (WAZ59_07890) matP 1482269..1482721 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WAZ59_RS07895 (WAZ59_07895) ycbZ 1482907..1484667 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=857650 WAZ59_RS07875 WP_000839153.1 1479439..1480068(-) (sxy/tfoX) [Escherichia coli strain 22F46]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=857650 WAZ59_RS07875 WP_000839153.1 1479439..1480068(-) (sxy/tfoX) [Escherichia coli strain 22F46]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1