Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   V9L10_RS13435 Genome accession   NZ_CP147025
Coordinates   2759444..2760100 (-) Length   218 a.a.
NCBI ID   WP_000611329.1    Uniprot ID   -
Organism   Escherichia coli strain KCTC 2571     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2754444..2765100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9L10_RS13405 (V9L10_13405) yecA 2755696..2756361 (-) 666 WP_000847902.1 UPF0149 family protein YecA -
  V9L10_RS13425 (V9L10_13425) pgsA 2757010..2757558 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V9L10_RS13430 (V9L10_13430) uvrC 2757615..2759447 (-) 1833 WP_001283424.1 excinuclease ABC subunit UvrC Machinery gene
  V9L10_RS13435 (V9L10_13435) letA 2759444..2760100 (-) 657 WP_000611329.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  V9L10_RS13440 (V9L10_13440) - 2760242..2760358 (+) 117 WP_001302039.1 hypothetical protein -
  V9L10_RS13445 (V9L10_13445) yecU 2760396..2760572 (+) 177 WP_000590344.1 protein YecU -
  V9L10_RS13450 (V9L10_13450) yecF 2760559..2760783 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  V9L10_RS13455 (V9L10_13455) sdiA 2760851..2761573 (-) 723 WP_001154273.1 transcriptional regulator SdiA -
  V9L10_RS13460 (V9L10_13460) tcyN 2761803..2762555 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  V9L10_RS13465 (V9L10_13465) tcyL 2762552..2763220 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  V9L10_RS13470 (V9L10_13470) dcyD 2763235..2764221 (-) 987 WP_001128215.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=857596 V9L10_RS13435 WP_000611329.1 2759444..2760100(-) (letA) [Escherichia coli strain KCTC 2571]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKSAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=857596 V9L10_RS13435 WP_000611329.1 2759444..2760100(-) (letA) [Escherichia coli strain KCTC 2571]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGTCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAAGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482