Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   STYK_RS07840 Genome accession   NZ_AP024523
Coordinates   1537726..1538958 (-) Length   410 a.a.
NCBI ID   WP_261804835.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1532726..1543958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS07815 (STYK_14900) whiA 1533915..1534826 (-) 912 WP_000011282.1 DNA-binding protein WhiA -
  STYK_RS07820 (STYK_14910) - 1534823..1535800 (-) 978 WP_261804833.1 YvcK family protein -
  STYK_RS07825 (STYK_14920) rapZ 1535797..1536687 (-) 891 WP_000163061.1 RNase adapter RapZ -
  STYK_RS07830 (STYK_14930) - 1536739..1537119 (-) 381 WP_261804834.1 RidA family protein -
  STYK_RS07835 (STYK_14940) yihA 1537130..1537717 (-) 588 WP_000422605.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  STYK_RS07840 (STYK_14950) clpX 1537726..1538958 (-) 1233 WP_261804835.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  STYK_RS07845 (STYK_14960) - 1538995..1539165 (-) 171 WP_000442260.1 hypothetical protein -
  STYK_RS07850 (STYK_14970) - 1539165..1539671 (-) 507 WP_000162453.1 dihydrofolate reductase -
  STYK_RS07855 (STYK_14980) - 1539803..1540321 (-) 519 WP_261804836.1 Dps family protein -
  STYK_RS07860 (STYK_14990) lytC 1540555..1542165 (-) 1611 WP_261804837.1 choline binding-anchored murein hydrolase LytC -
  STYK_RS07865 (STYK_15000) tpiA 1542203..1542961 (-) 759 WP_004269852.1 triose-phosphate isomerase -
  STYK_RS07870 (STYK_15010) - 1543059..1543736 (-) 678 WP_024056951.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45682.19 Da        Isoelectric Point: 4.4550

>NTDB_id=85755 STYK_RS07840 WP_261804835.1 1537726..1538958(-) (clpX) [Streptococcus toyakuensis strain TP1632]
MPTTRNNDMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPRQEMIQVDT
KNIVFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=85755 STYK_RS07840 WP_261804835.1 1537726..1538958(-) (clpX) [Streptococcus toyakuensis strain TP1632]
ATGCCTACAACTAGGAATAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTACAAAAAATAAT
CGCTGGGAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTGGCTCAGGAAATCATTCGAGAGGAGTTGGCGGAAGAAG
TCTTGGCAGACTTGTCTGAAGTTCCAAAACCAATCGAACTCCTCCATATCTTGAACCACTATGTAATCGGTCAAGATCGT
GCAAAACGTGCTTTAGCAGTAGCAGTATACAACCACTACAAACGCATCAATTTCCACGATACGCGTGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATCTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCCTTGCTCAGACCTTGGCTA
AGAGCTTGAATGTACCTTTTGCGATCGCAGATGCGACAGCTCTTACTGAGGCTGGTTATGTTGGTGAGGACGTGGAAAAT
ATCCTCCTCAAACTCCTGCAGGCTGCTGACTTTAATATTGAACGTGCAGAGCGTGGGATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGTGAGAATGTATCGATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTCCTCAAGA
TTATCGAGGGAACCGTTGCTAGCGTGCCGCCTCAAGGTGGACGCAAGCATCCACGACAAGAGATGATTCAAGTGGATACT
AAAAATATCGTCTTCATCGTGGGTGGTGCCTTTGATGGCATTGAAGAAATCGTCAAACAACGTCTTGGTGAAAAAGTCAT
CGGATTTGGTCAAAACAATAAAGCGATTGATGAAAATAGCTCTTACATGCAAGAAATCATCGCAGAAGATATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGTTTGCCTGTCTTTGCTGCTCTTGAACAATTGACAGTAGATGATTTGGTGCGT
ATTTTGAAAGAGCCAAGAAATGCCTTGGTCAAACAATACCAAACCTTGCTGTCTTATGATGATGTTGAGTTGGAATTTGA
CGACGAAGCTCTTCAAGAGATTGCCAATAAGGCCATCGAACGCAAAACAGGGGCGCGTGGTCTTCGTTCGATTATTGAAG
AAACCATGCTAGATGTCATGTTTGAAGTACCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACAAAAGAAGCTGTCGAT
GGAACGGATAAACCAATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.341

100

0.863
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.214

98.049

0.561

Multiple sequence alignment