Detailed information NTG0857386

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q1L34_RS21780
• Genome accession: NZ_CP130153
• Coordinates: 4577765..4578562 (+)
• Length: 265 a.a.
• NCBI ID: WP_327204281.1
• Uniprot ID: -
• Organism: Raoultella ornithinolytica strain RoM27LC23
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4572765..4583562

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q1L34_RS21745 (Q1L34_21740)	gspH	4572885..4573403 (+)	519	WP_004858046.1	type II secretion system minor pseudopilin GspH	-
Q1L34_RS21750 (Q1L34_21745)	gspI	4573400..4573765 (+)	366	WP_004858044.1	type II secretion system minor pseudopilin GspI	-
Q1L34_RS21755 (Q1L34_21750)	gspJ	4573777..4574361 (+)	585	WP_004858042.1	type II secretion system minor pseudopilin GspJ	-
Q1L34_RS21760 (Q1L34_21755)	gspK	4574358..4575344 (+)	987	WP_054829280.1	type II secretion system minor pseudopilin GspK	-
Q1L34_RS21765 (Q1L34_21760)	gspL	4575331..4576533 (+)	1203	WP_327204280.1	type II secretion system protein GspL	-
Q1L34_RS21770 (Q1L34_21765)	-	4576526..4577020 (+)	495	WP_032716581.1	type II secretion system protein GspM	-
Q1L34_RS21775 (Q1L34_21770)	-	4577010..4577750 (+)	741	WP_097357756.1	type II secretion system protein N	-
Q1L34_RS21780 (Q1L34_21775)	pilD	4577765..4578562 (+)	798	WP_327204281.1	A24 family peptidase	Machinery gene
Q1L34_RS21785 (Q1L34_21780)	hrpB	4578583..4581012 (-)	2430	WP_064359573.1	ATP-dependent helicase HrpB	-
Q1L34_RS21790 (Q1L34_21785)	thpR	4581085..4581621 (+)	537	WP_004858022.1	RNA 2',3'-cyclic phosphodiesterase	-
Q1L34_RS21795 (Q1L34_21790)	sfsA	4581621..4582337 (+)	717	WP_071359157.1	DNA/RNA nuclease SfsA	-
Q1L34_RS21800 (Q1L34_21795)	dksA	4582502..4582957 (+)	456	WP_004858018.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 265 a.a.
• Molecular weight: 29275.89 Da
• Isoelectric Point: 8.4762

>NTDB_id=857386 Q1L34_RS21780 WP_327204281.1 4577765..4578562(+) (pilD) [Raoultella ornithinolytica strain RoM27LC23]
MTLLSAFSLQFPLLWGGLLFIFGLTFGSFFNVVIYRLPLMMQQEESARFNLCVPASFCPQCQRPIIWRDNIPLLSYLSLK
GRARCCQAPISQRYPLTELASGLLFVLAGYLLTPGLSLLGGLILLSTLLVLAIIDGQTQLLPDRLTLPLLWAGLLFNLNG
TFVPLSEAVIGAMTGYLSLWTVYWLFRLLTGKEALGYGDFKLLAALGAWSGWQILPQTLLCASASGLIWTLLQRRITLQS
LDQPLAFGPWLALAGSGLFLWTQTL

Nucleotide

• Length: 798 bp

>NTDB_id=857386 Q1L34_RS21780 WP_327204281.1 4577765..4578562(+) (pilD) [Raoultella ornithinolytica strain RoM27LC23]
ATGACGCTACTGAGCGCATTTTCGTTGCAGTTCCCCCTGTTATGGGGCGGATTGTTGTTTATTTTCGGCCTGACGTTTGG
CAGCTTTTTTAACGTGGTTATCTACCGTTTGCCGCTGATGATGCAGCAGGAAGAGTCCGCACGATTCAACCTGTGCGTTC
CCGCCTCCTTCTGCCCCCAGTGCCAGCGGCCCATCATCTGGCGGGATAATATTCCGCTGCTCAGCTATCTCTCACTCAAA
GGGCGCGCCCGCTGCTGCCAGGCGCCCATTTCTCAGCGCTATCCGCTGACGGAACTGGCCAGCGGACTGCTCTTTGTGTT
GGCCGGCTATCTGCTGACGCCGGGATTATCGCTGCTGGGGGGCCTGATCCTGCTCTCCACGCTGCTGGTACTGGCGATCA
TCGACGGCCAGACTCAGCTCCTGCCGGATCGGCTGACTCTGCCGCTGCTGTGGGCCGGTCTGCTGTTTAATCTCAACGGC
ACGTTTGTCCCGCTCAGCGAAGCGGTGATCGGCGCCATGACGGGCTATTTATCACTGTGGACGGTTTACTGGCTGTTTCG
CCTGCTGACCGGCAAAGAGGCGCTAGGATACGGCGATTTTAAGCTGCTGGCGGCACTCGGCGCATGGTCCGGCTGGCAGA
TCCTGCCGCAGACGCTGCTGTGCGCCTCGGCCAGCGGCCTGATCTGGACCTTGCTGCAACGGCGGATCACGCTCCAGTCG
CTGGATCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCAGCGGCCTGTTTCTGTGGACTCAGACGCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (122-230)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	48.529	100	0.498
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.479
pilD	Neisseria gonorrhoeae MS11	46.614	94.717	0.442
pilD	Acinetobacter baumannii D1279779	45.276	95.849	0.434
pilD	Acinetobacter nosocomialis M2	44.882	95.849	0.43