Detailed information NTG0856954

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q0Y58_RS31725
• Genome accession: NZ_CP129997
• Coordinates: 6155228..6156100 (+)
• Length: 290 a.a.
• NCBI ID: WP_003116251.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PA1045
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6150228..6161100

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q0Y58_RS31705	-	6150771..6151469 (-)	699	WP_227788634.1	hypothetical protein	-
Q0Y58_RS31710	-	6151533..6152072 (-)	540	WP_033938465.1	pilin	-
Q0Y58_RS31715	pilB	6152301..6154004 (+)	1704	WP_003116249.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Q0Y58_RS31720	pilC	6154008..6155225 (+)	1218	WP_003116250.1	type II secretion system F family protein	Machinery gene
Q0Y58_RS31725	pilD	6155228..6156100 (+)	873	WP_003116251.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
Q0Y58_RS31730	coaE	6156097..6156708 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
Q0Y58_RS31735	yacG	6156705..6156905 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
Q0Y58_RS31740	-	6156942..6157151 (-)	210	WP_003094660.1	hypothetical protein	-
Q0Y58_RS31745	-	6157257..6157946 (-)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
Q0Y58_RS31750	-	6157943..6158413 (-)	471	WP_003094664.1	hypothetical protein	-
Q0Y58_RS31755	-	6158410..6158835 (-)	426	WP_003094666.1	GNAT family N-acetyltransferase	-
Q0Y58_RS31760	-	6158968..6159597 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
Q0Y58_RS31765	-	6159594..6160043 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
Q0Y58_RS31770	-	6160069..6160239 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31871.89 Da
• Isoelectric Point: 7.3454

>NTDB_id=856954 Q0Y58_RS31725 WP_003116251.1 6155228..6156100(+) (pilD) [Pseudomonas aeruginosa strain PA1045]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=856954 Q0Y58_RS31725 WP_003116251.1 6155228..6156100(+) (pilD) [Pseudomonas aeruginosa strain PA1045]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.017	99.655	0.548
pilD	Vibrio campbellii strain DS40M4	53.497	98.621	0.528
pilD	Acinetobacter nosocomialis M2	50.352	97.931	0.493
pilD	Acinetobacter baumannii D1279779	50.352	97.931	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472