Detailed information NTG0856843

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q1Z72_RS07650
• Genome accession: NZ_CP129981
• Coordinates: 1590637..1591506 (-)
• Length: 289 a.a.
• NCBI ID: WP_196932544.1
• Uniprot ID: -
• Organism: Pseudomonas qingdaonensis strain L1712hy
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1585637..1596506

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q1Z72_RS07620 (Q1Z72_07620)	-	1586644..1587939 (-)	1296	WP_043860321.1	NAD(P)/FAD-dependent oxidoreductase	-
Q1Z72_RS07625 (Q1Z72_07625)	-	1588030..1588203 (-)	174	WP_043860322.1	DUF3094 family protein	-
Q1Z72_RS07630 (Q1Z72_07630)	-	1588372..1589001 (-)	630	WP_043860323.1	DUF1780 domain-containing protein	-
Q1Z72_RS07635 (Q1Z72_07635)	-	1589131..1589820 (+)	690	WP_302099547.1	energy-coupling factor ABC transporter permease	-
Q1Z72_RS07640 (Q1Z72_07640)	yacG	1589817..1590020 (-)	204	WP_043860325.1	DNA gyrase inhibitor YacG	-
Q1Z72_RS07645 (Q1Z72_07645)	coaE	1590017..1590640 (-)	624	WP_078479476.1	dephospho-CoA kinase	-
Q1Z72_RS07650 (Q1Z72_07650)	pilD	1590637..1591506 (-)	870	WP_196932544.1	A24 family peptidase	Machinery gene
Q1Z72_RS07655 (Q1Z72_07655)	-	1591509..1592717 (-)	1209	WP_302099548.1	type II secretion system F family protein	-
Q1Z72_RS07660 (Q1Z72_07660)	-	1592934..1593362 (+)	429	WP_302099549.1	pilin	-
Q1Z72_RS07670 (Q1Z72_07670)	-	1593645..1593809 (+)	165	Protein_1498	integrase arm-type DNA-binding domain-containing protein	-
Q1Z72_RS07675 (Q1Z72_07675)	-	1594530..1595648 (+)	1119	WP_302099550.1	nucleoid-associated protein	-
Q1Z72_RS07680 (Q1Z72_07680)	-	1595655..1596377 (+)	723	WP_302099551.1	hypothetical protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32112.25 Da
• Isoelectric Point: 7.3446

>NTDB_id=856843 Q1Z72_RS07650 WP_196932544.1 1590637..1591506(-) (pilD) [Pseudomonas qingdaonensis strain L1712hy]
MDLFETLARQPLAYQCVALLLGLIVGSFINVLVHRLPMMLERQWRSEAREVLELPSPAEPRFDLMLPHSHCPHCQHRIRA
WENIPVLSYLCLRGRCSACKASISPRYPLVELTCAGLGLFAAWHFGFSASAAAFMLLSWGLLAMSLIDIEHQLLPDVLVL
PLLWLGLILNAFEVFVPLDQALWGAVAGYLSLWTVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLASLVGA
LLGLVLLRLRNQQASTPIPFGPYLAIAGWIALLWGGQMTTSYLQFAGLQ

Nucleotide

• Length: 870 bp

>NTDB_id=856843 Q1Z72_RS07650 WP_196932544.1 1590637..1591506(-) (pilD) [Pseudomonas qingdaonensis strain L1712hy]
ATGGACCTGTTCGAAACCCTGGCCCGCCAGCCGCTGGCCTACCAATGCGTCGCCCTGTTGCTTGGCCTGATTGTGGGCAG
CTTCATCAATGTGCTGGTGCATCGCTTGCCGATGATGCTGGAGCGCCAATGGCGCAGCGAGGCCCGTGAAGTGCTGGAGC
TGCCCAGCCCGGCCGAGCCACGTTTCGACCTGATGCTGCCCCACTCCCACTGCCCGCACTGCCAGCACCGCATCCGCGCG
TGGGAGAACATCCCGGTGCTGAGTTACCTGTGCCTGCGCGGGCGCTGTTCGGCCTGCAAGGCATCGATCAGCCCGCGCTA
CCCGCTGGTGGAGCTGACCTGCGCAGGGCTTGGCCTGTTCGCGGCCTGGCATTTCGGCTTCAGCGCCAGCGCAGCGGCGT
TCATGCTGTTGAGCTGGGGCTTGCTGGCAATGAGCCTGATCGATATCGAGCATCAGTTGCTGCCCGACGTGCTGGTGCTG
CCGCTGCTGTGGCTGGGCCTGATACTCAATGCCTTCGAGGTGTTCGTGCCGCTGGACCAGGCGCTGTGGGGCGCCGTGGC
CGGCTACCTGAGCCTGTGGACGGTGTACTGGCTGTTCAAGCTGGTCACCGGCAAGGAGGGCATGGGCTATGGCGATTTCA
AGCTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGGCCTCGTTGGTGGGCGCG
CTGCTGGGCCTGGTACTGCTGCGCCTGCGCAACCAGCAGGCAAGCACGCCGATTCCGTTTGGGCCCTATCTGGCCATTGC
GGGCTGGATCGCGTTGCTCTGGGGTGGTCAAATGACCACTTCCTATCTGCAATTTGCCGGACTGCAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.147	98.962	0.526
pilD	Vibrio campbellii strain DS40M4	49.296	98.27	0.484
pilD	Acinetobacter baumannii D1279779	46.479	98.27	0.457
pilD	Acinetobacter nosocomialis M2	45.423	98.27	0.446
pilD	Neisseria gonorrhoeae MS11	47.843	88.235	0.422