Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Q0G00_RS06000 Genome accession   NZ_CP129978
Coordinates   1209975..1211027 (-) Length   350 a.a.
NCBI ID   WP_069119597.1    Uniprot ID   A0A1D2LR48
Organism   Brochothrix thermosphacta strain DH-B18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1204975..1216027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0G00_RS05985 (Q0G00_05985) hemA 1205106..1206398 (-) 1293 WP_069125419.1 glutamyl-tRNA reductase -
  Q0G00_RS05990 (Q0G00_05990) hemE 1206417..1207466 (-) 1050 WP_120483108.1 uroporphyrinogen decarboxylase -
  Q0G00_RS05995 (Q0G00_05995) rny 1208098..1209660 (-) 1563 WP_029091997.1 ribonuclease Y -
  Q0G00_RS06000 (Q0G00_06000) recA 1209975..1211027 (-) 1053 WP_069119597.1 recombinase RecA Machinery gene
  Q0G00_RS06005 (Q0G00_06005) - 1211162..1212418 (-) 1257 WP_301989864.1 competence/damage-inducible protein A -
  Q0G00_RS06010 (Q0G00_06010) pgsA 1212592..1213173 (-) 582 WP_029092000.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  Q0G00_RS06015 (Q0G00_06015) - 1213272..1214144 (-) 873 WP_069128561.1 RodZ domain-containing protein -
  Q0G00_RS06020 (Q0G00_06020) - 1214788..1216017 (-) 1230 WP_301989865.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37828.94 Da        Isoelectric Point: 4.8647

>NTDB_id=856798 Q0G00_RS06000 WP_069119597.1 1209975..1211027(-) (recA) [Brochothrix thermosphacta strain DH-B18]
MDNRQAALEQALKQIEKQFGKGSIMKLGEKTDTNIKTIPSGSLALDVALGVGGYPRGRVVEVYGPESSGKTTVALHAIAE
VQEQGGTAAFIDAEHALDPAYAKKLGVNIDELLLSQPDTGEQALEICEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGSINKSKTIALFINQIREKVGVMFGNPEITPGGRALKFYASVRLEVRRAEQLKQGTDIIGNKT
RIKVVKNKVAPPFRIAEVDIVYGEGISREGELVDMAAEEDIIIKSGSWYSYEGERIGQGRENAKQYLREHTDTRLEISGK
VRNAYGIGDDLPESAEVVEEAAVDTENVEK

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=856798 Q0G00_RS06000 WP_069119597.1 1209975..1211027(-) (recA) [Brochothrix thermosphacta strain DH-B18]
TTGGATAATCGTCAAGCAGCCTTAGAACAGGCATTAAAACAAATTGAAAAGCAATTCGGTAAAGGTTCTATCATGAAATT
AGGTGAAAAAACTGATACCAATATAAAAACTATTCCAAGTGGCTCGTTGGCACTTGATGTGGCATTAGGTGTTGGTGGTT
ATCCTCGTGGACGTGTTGTTGAAGTATACGGTCCAGAAAGTTCAGGTAAAACAACTGTAGCATTACATGCAATTGCAGAA
GTTCAAGAACAAGGCGGAACAGCGGCGTTTATCGATGCAGAGCATGCACTTGATCCAGCTTATGCTAAAAAATTAGGCGT
TAATATTGATGAATTACTACTTTCTCAACCTGATACAGGTGAACAAGCACTTGAAATATGTGAAGCGTTAGTACGTTCAG
GAGCCGTTGATATCGTTGTTGTCGATTCAGTAGCTGCTTTGGTACCAAAAGCTGAAATTGAAGGCGAAATGGGAGACTCA
CACGTTGGTCTTCAAGCGCGTTTAATGTCACAAGCTTTACGTAAATTATCAGGTTCAATCAACAAATCGAAAACAATTGC
ACTGTTCATTAACCAAATTCGTGAAAAAGTCGGTGTTATGTTTGGTAACCCTGAAATTACACCAGGTGGTCGTGCATTGA
AATTTTATGCGTCAGTTCGTTTAGAAGTACGTCGTGCTGAACAACTAAAACAAGGTACTGATATTATCGGTAACAAAACA
CGAATTAAAGTTGTTAAAAATAAAGTAGCGCCACCTTTCCGTATTGCCGAAGTTGATATTGTATACGGAGAAGGAATTTC
ACGTGAAGGTGAATTGGTTGATATGGCAGCTGAAGAAGATATCATTATCAAAAGTGGTTCATGGTATTCTTATGAAGGCG
AACGAATTGGCCAAGGTCGTGAAAATGCAAAACAATATTTACGTGAACATACTGACACTCGTTTAGAAATTTCTGGAAAA
GTTCGTAATGCTTATGGTATTGGCGATGACTTACCAGAATCTGCTGAAGTAGTCGAAGAAGCGGCTGTTGATACGGAAAA
TGTTGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D2LR48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.03

94.286

0.783
  recA Latilactobacillus sakei subsp. sakei 23K

78.932

96.286

0.76
  recA Streptococcus pneumoniae D39

67.241

99.429

0.669
  recA Streptococcus pneumoniae R6

67.241

99.429

0.669
  recA Streptococcus pneumoniae TIGR4

67.241

99.429

0.669
  recA Streptococcus pneumoniae Rx1

67.241

99.429

0.669
  recA Streptococcus mitis SK321

66.193

100

0.666
  recA Streptococcus mitis NCTC 12261

66.193

100

0.666
  recA Streptococcus pyogenes NZ131

69.605

94

0.654
  recA Streptococcus mutans UA159

68.485

94.286

0.646
  recA Lactococcus lactis subsp. cremoris KW2

68.278

94.571

0.646
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.92

99.429

0.606
  recA Vibrio cholerae strain A1552

60.92

99.429

0.606
  recA Neisseria gonorrhoeae MS11

64.832

93.429

0.606
  recA Neisseria gonorrhoeae MS11

64.832

93.429

0.606
  recA Neisseria gonorrhoeae strain FA1090

64.832

93.429

0.606
  recA Ralstonia pseudosolanacearum GMI1000

65.815

89.429

0.589
  recA Glaesserella parasuis strain SC1401

63.665

92

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.08

93.429

0.58
  recA Acinetobacter baylyi ADP1

63.24

91.714

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.774

93.429

0.577
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.774

93.429

0.577
  recA Helicobacter pylori 26695

58.944

97.429

0.574
  recA Helicobacter pylori strain NCTC11637

58.944

97.429

0.574
  recA Pseudomonas stutzeri DSM 10701

62.305

91.714

0.571
  recA Acinetobacter baumannii D1279779

61.994

91.714

0.569