Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   V9Z47_RS25595 Genome accession   NZ_CP146670
Coordinates   5112125..5113534 (+) Length   469 a.a.
NCBI ID   WP_001188777.1    Uniprot ID   Q32A39
Organism   Escherichia coli strain MS 21-1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 5107125..5118534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9Z47_RS25580 (V9Z47_25580) typA 5107285..5109108 (-) 1824 WP_000570668.1 ribosome-dependent GTPase TypA -
  V9Z47_RS25585 (V9Z47_25585) glnA 5109481..5110890 (+) 1410 WP_001271717.1 glutamate--ammonia ligase -
  V9Z47_RS25590 (V9Z47_25590) glnL 5111064..5112113 (+) 1050 WP_000190573.1 nitrogen regulation protein NR(II) -
  V9Z47_RS25595 (V9Z47_25595) luxO 5112125..5113534 (+) 1410 WP_001188777.1 nitrogen regulation protein NR(I) Regulator
  V9Z47_RS25600 (V9Z47_25600) yshB 5113646..5113756 (+) 111 WP_000893994.1 YshB family small membrane protein -
  V9Z47_RS25605 (V9Z47_25605) hemN 5113985..5115358 (-) 1374 WP_000116107.1 oxygen-independent coproporphyrinogen III oxidase -
  V9Z47_RS25610 (V9Z47_25610) yihI 5115547..5116056 (-) 510 WP_024198872.1 Der GTPase-activating protein YihI -
  V9Z47_RS25615 (V9Z47_25615) - 5116175..5116341 (-) 167 Protein_5017 hypothetical protein -
  V9Z47_RS25620 (V9Z47_25620) yihA 5116638..5117270 (+) 633 WP_000183349.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52254.74 Da        Isoelectric Point: 6.4561

>NTDB_id=856751 V9Z47_RS25595 WP_001188777.1 5112125..5113534(+) (luxO) [Escherichia coli strain MS 21-1]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR
LARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=856751 V9Z47_RS25595 WP_001188777.1 5112125..5113534(+) (luxO) [Escherichia coli strain MS 21-1]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACGACATTTGAGAACGGCGCGGAAGTACTGGAGGCGTTGGCGAGCAAAACGCCGGATGTACTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCGCTGCTCAAGCAGATTAAACAGCGCCATCCGATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAAGGGGCGTTTGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCCGTGGCGCTGGTTGAGCGCGCCATCAGCCATTATCAGGAACAGCAGCAGCCGCGTAATGTTCAGCTTA
ACGGCCCAACGACCGATATCATCGGCGAAGCGCCAGCCATGCAGGACGTGTTCCGTATTATCGGTCGGCTTTCGCGTTCT
TCTATTAGCGTGCTGATTAACGGCGAATCCGGCACCGGTAAAGAACTGGTCGCTCATGCCCTGCATCGCCACAGTCCGCG
AGCCAAAGCGCCATTTATCGCGCTGAATATGGCTGCTATCCCGAAGGATTTGATCGAATCAGAACTGTTTGGTCACGAGA
AAGGCGCATTTACCGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAAGCTGATGGCGGTACATTATTCCTCGATGAA
ATTGGCGATATGCCGCTGGATGTGCAGACGCGTTTGCTGCGCGTGCTGGCAGACGGTCAGTTTTATCGCGTTGGCGGCTA
TGCGCCGGTGAAAGTGGATGTGCGGATTATCGCTGCCACTCACCAGAATCTTGAACAGCGGGTGCAGGAAGGTAAGTTCC
GTGAGGATCTGTTCCACCGCCTGAACGTTATCCGCGTTCATCTGCCGCCATTGCGTGAGCGTCGGGAAGATATTCCCCGT
CTGGCACGCCATTTTTTACAGGTTGCCGCGCGCGAACTGGGCGTAGAAGCGAAGTTGCTGCATCCGGAAACCGAAGCCGC
GCTGACGCGCCTGGCGTGGCCGGGGAACGTGCGTCAGCTGGAAAACACCTGCCGCTGGTTAACGGTAATGGCCGCCGGGC
AGGAAGTGTTGATTCAGGATTTGCCCGGTGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCTCAAATGCAACCGGAC
AGTTGGGCAACACTTTTAGCGCAGTGGGCAGACAGAGCGCTGCGTTCCGGTCATCAAAACCTGCTTTCCGAAGCGCAGCC
TGAGCTGGAGCGGACGTTACTGACGACCGCGTTGCGACATACGCAGGGGCATAAACAGGAAGCGGCGCGGCTACTCGGCT
GGGGCCGCAACACCCTGACGCGTAAGTTAAAAGAGCTAGGGATGGAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32A39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

39.871

98.934

0.394
  pilR Pseudomonas aeruginosa PAK

39.066

100

0.392