Detailed information NTG0856645

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QYQ93_RS04905
• Genome accession: NZ_CP129946
• Coordinates: 1112529..1113395 (-)
• Length: 288 a.a.
• NCBI ID: WP_338476446.1
• Uniprot ID: -
• Organism: Pseudomonas khavaziana strain SR9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1107529..1118395

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYQ93_RS04870 (QYQ93_04870)	-	1108227..1109525 (-)	1299	WP_046070857.1	NAD(P)/FAD-dependent oxidoreductase	-
QYQ93_RS04875 (QYQ93_04875)	-	1109586..1109759 (-)	174	WP_043049308.1	DUF3094 family protein	-
QYQ93_RS04880 (QYQ93_04880)	-	1109847..1110476 (-)	630	WP_043049309.1	DUF1780 domain-containing protein	-
QYQ93_RS04885 (QYQ93_04885)	-	1110746..1111435 (+)	690	WP_043049310.1	energy-coupling factor ABC transporter permease	-
QYQ93_RS04890 (QYQ93_04890)	-	1111500..1111715 (+)	216	WP_003171680.1	hypothetical protein	-
QYQ93_RS04895 (QYQ93_04895)	yacG	1111712..1111912 (-)	201	WP_043049311.1	DNA gyrase inhibitor YacG	-
QYQ93_RS04900 (QYQ93_04900)	coaE	1111909..1112532 (-)	624	WP_338476445.1	dephospho-CoA kinase	-
QYQ93_RS04905 (QYQ93_04905)	pilD	1112529..1113395 (-)	867	WP_338476446.1	A24 family peptidase	Machinery gene
QYQ93_RS04910 (QYQ93_04910)	pilC	1113392..1114600 (-)	1209	WP_043049314.1	type II secretion system F family protein	Machinery gene
QYQ93_RS04915 (QYQ93_04915)	-	1114801..1115214 (+)	414	WP_043049315.1	pilin	-
QYQ93_RS04925 (QYQ93_04925)	-	1115501..1115806 (+)	306	WP_043049316.1	DUF6388 family protein	-
QYQ93_RS04930 (QYQ93_04930)	nadC	1115926..1116774 (-)	849	WP_043049317.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31794.14 Da
• Isoelectric Point: 7.9097

>NTDB_id=856645 QYQ93_RS04905 WP_338476446.1 1112529..1113395(-) (pilD) [Pseudomonas khavaziana strain SR9]
MILLLTEQSWFFVAMALVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEILGLPAASAGPAYNLMRPNSCCTRCEQPIRPW
ENIPLLSYLLLRGRCAHCREPISLRYPLTELTCALISATVAWHFGFGWQAGAVLLLSWGLLGLSLIDLDHQLLPDALVLP
LLWLGLILNSADLLATLPDALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGLI
AGLILLRLRKAPVSAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=856645 QYQ93_RS04905 WP_338476446.1 1112529..1113395(-) (pilD) [Pseudomonas khavaziana strain SR9]
TTGATCCTGCTGCTGACTGAACAATCCTGGTTTTTCGTCGCCATGGCACTGGTGCTGGGCCTGATCGTCGGCAGTTTCCT
CAATGTGCTGGTGTGGCGGCTGCCAAAAATGCTCGAGCGCGAATGGCGTGCCCAGGCCCATGAGATCCTCGGTTTGCCTG
CCGCATCCGCCGGGCCGGCCTATAACCTGATGCGCCCGAATTCCTGCTGCACCCGTTGCGAACAGCCGATTCGGCCCTGG
GAAAATATTCCACTGCTCAGCTACCTGTTGCTCAGGGGGCGTTGTGCCCATTGCCGTGAGCCTATCAGCCTTCGTTATCC
CTTAACCGAGCTGACCTGTGCGTTGATCTCGGCCACTGTTGCCTGGCACTTCGGTTTTGGCTGGCAGGCCGGCGCGGTGC
TGTTGTTGAGCTGGGGCTTACTGGGCCTGAGCCTGATTGATCTCGACCATCAATTGTTACCGGATGCGCTGGTGCTGCCG
CTGCTATGGCTGGGACTCATCCTCAACAGCGCCGACCTGCTGGCGACCTTGCCCGATGCGCTGTGGGGTGCGGTCATTGG
CTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGTAAAGATGGCATGGGCCATGGCGACTTCAAGT
TATTGGCATTACTGGGGGCCTGGGGTGGGTGGCAGATACTGCCAATGACATTGCTGATGGCCTCACTGTTGGGCTTGATT
GCCGGGCTGATTCTATTGCGTTTGCGCAAGGCCCCGGTGTCAGCACCGATGCCATTTGGTCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (135-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.047	96.875	0.514
pilD	Vibrio campbellii strain DS40M4	50.714	97.222	0.493
pilD	Neisseria gonorrhoeae MS11	49.624	92.361	0.458
pilD	Acinetobacter baumannii D1279779	48.529	94.444	0.458
pilD	Acinetobacter nosocomialis M2	48.529	94.444	0.458