Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   QZL45_RS09550 Genome accession   NZ_CP129944
Coordinates   2038813..2040174 (-) Length   453 a.a.
NCBI ID   WP_308413458.1    Uniprot ID   -
Organism   Vibrio fluvialis strain I7A     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2033813..2045174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL45_RS09515 moaE 2034517..2034972 (-) 456 WP_020327922.1 molybdopterin synthase catalytic subunit MoaE -
  QZL45_RS09520 moaD 2034974..2035219 (-) 246 WP_024373869.1 molybdopterin synthase sulfur carrier subunit -
  QZL45_RS09525 moaC 2035216..2035695 (-) 480 WP_024373868.1 cyclic pyranopterin monophosphate synthase MoaC -
  QZL45_RS09530 moaB 2035705..2036217 (-) 513 WP_158142279.1 molybdenum cofactor biosynthesis protein B -
  QZL45_RS09535 moaA 2036289..2037278 (-) 990 WP_322529647.1 GTP 3',8-cyclase MoaA -
  QZL45_RS09540 - 2037589..2038479 (+) 891 WP_222747260.1 YvcK family protein -
  QZL45_RS09545 luxU 2038468..2038806 (-) 339 WP_020327928.1 quorum-sensing phosphorelay protein LuxU -
  QZL45_RS09550 luxO 2038813..2040174 (-) 1362 WP_308413458.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  QZL45_RS09555 uvrB 2040461..2042491 (-) 2031 WP_020327930.1 excinuclease ABC subunit UvrB -
  QZL45_RS09565 - 2043476..2044114 (-) 639 WP_047461914.1 TetR/AcrR family transcriptional regulator -
  QZL45_RS09570 - 2044301..2045167 (+) 867 WP_047461911.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50247.44 Da        Isoelectric Point: 5.5480

>NTDB_id=856615 QZL45_RS09550 WP_308413458.1 2038813..2040174(-) (luxO) [Vibrio fluvialis strain I7A]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEADNPGNQNYQGFIGSSQTMLAVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLG
YMSKEEGKGFVRLAPEVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREITLNMLPPPLNQPSESIISAPKASAAPVSVHE
IFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=856615 QZL45_RS09550 WP_308413458.1 2038813..2040174(-) (luxO) [Vibrio fluvialis strain I7A]
ATGGTCGAAGATACGGCGTCAGTGGCGGCGTTATATCGCTCGTACCTGACTCCGCTAGAGATCGATATCAACATCGTCGG
AACCGGGCGTGAAGCGATCGAAAGTATCGCGCATCGCGAACCGGATCTCATTCTACTCGATCTGCGCCTGCCGGACATGA
CCGGTATGGACGTATTACACGCTGTTAAACAGCGCTCGCCGGATGTACCTGTGATTTTTATGACCGCACATGGTTCAATT
GATACTGCGGTTGAGGCGATGCGTCATGGCGCACAGGATTTCCTCATCAAACCGTGTGAAGCAGACCGCTTACGTGTCAC
GGTAAACAATGCGATTCGTAAAGCCAGCAAGCTGAAGAATGAAGCTGACAATCCGGGTAACCAGAATTACCAAGGCTTTA
TCGGCAGTAGTCAAACCATGCTTGCGGTTTATCGCACCATTGACTCTGCGGCCAGCAGTAAGGCAAGCATCTTCATTACT
GGAGAAAGCGGTACGGGTAAAGAAGTGTGCGCGGAAGCGATTCACGCCGCCAGTAGACGCGGCGACAAACCGTTCATCGC
GATTAACTGTGCCGCGATTCCTAAAGATCTGATTGAAAGTGAATTGTTTGGTCATGTTAAAGGCGCATTTACTGGCGCAG
CAACGGATCGCCAGGGCGCTGCAGAATTGGCCGACGGCGGCACTCTGTTCCTCGATGAGCTGTGCGAAATGGATCTCGAT
CTGCAGACTAAATTGTTGCGCTTTATTCAGACCGGCACCTTCCAGAAAGTCGGCTCGTCAAAAATGAAAAGTGTGGATGT
GCGTTTTGTCTGCGCGACCAACCGTGACCCATGGAAAGAAGTGCAGGAAGGCCGTTTCCGTGAAGATTTGTACTACCGTC
TGTACGTCATTCCACTGCATCTGCCGCCTTTACGTGAGCGTGGCGATGATGTCATTGAAATTGCCTATTCGCTGCTGGGC
TATATGTCGAAAGAAGAGGGCAAAGGATTTGTCCGTCTCGCTCCGGAAGTCGTAGAACGTTTTAAACAATACGAATGGCC
AGGTAATGTGCGTCAGCTGCAGAACGTACTGCGCAACGTTGTGGTGCTGAATGAAGGGCGTGAAATCACCCTGAATATGC
TGCCACCACCGCTCAATCAGCCAAGCGAAAGCATCATCAGTGCACCGAAGGCTAGTGCCGCGCCCGTATCGGTTCACGAA
ATCTTCCCGCTGTGGATGACGGAAAAGCAAGCCATTGAGAAAGCGATTGAAGCCTGCGATGGCAATATTCCGCGTGCTGC
CGGTTATCTGGACGTCAGCCCATCCACTATTTATCGCAAACTGCAAACCTGGAACGAGAAGGTGCAGGAAAAGGAAAAGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

91.704

98.455

0.903
  pilR Pseudomonas aeruginosa PAK

39.644

99.117

0.393