Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   QZL45_RS01795 Genome accession   NZ_CP129944
Coordinates   375900..376517 (-) Length   205 a.a.
NCBI ID   WP_024374317.1    Uniprot ID   M1KD28
Organism   Vibrio fluvialis strain I7A     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 370900..381517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL45_RS01785 aceF 372197..374092 (+) 1896 WP_020430458.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  QZL45_RS01790 lpdA 374351..375778 (+) 1428 WP_020331989.1 dihydrolipoyl dehydrogenase -
  QZL45_RS01795 opaR 375900..376517 (-) 618 WP_024374317.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  QZL45_RS01800 hpt 376838..377365 (+) 528 WP_020331991.1 hypoxanthine phosphoribosyltransferase -
  QZL45_RS01805 can 377415..378083 (-) 669 WP_020331992.1 carbonate dehydratase -
  QZL45_RS01810 - 378427..379344 (+) 918 WP_020331993.1 ABC transporter ATP-binding protein -
  QZL45_RS01815 - 379349..380117 (+) 769 Protein_343 ABC transporter permease -
  QZL45_RS01820 panC 380176..381057 (-) 882 WP_020331996.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23890.30 Da        Isoelectric Point: 6.2346

>NTDB_id=856604 QZL45_RS01795 WP_024374317.1 375900..376517(-) (opaR) [Vibrio fluvialis strain I7A]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTYVVRQFSNFL
TDNIDLDIHAKENLTNITDEMVKLANEDCHWLKVWFEWSASTRDEVWPLFVSSNRTNQLLVKNMFSKAIERGEVCEQHDP
EDLATLFHGVCYSLFVQANRVRDEGYMRKLVKSYLDMLCIYKRDH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=856604 QZL45_RS01795 WP_024374317.1 375900..376517(-) (opaR) [Vibrio fluvialis strain I7A]
ATGGACGCATCTATAGAGAAACGCCCTAGAACACGGCTATCTCCTCAAAAACGTAAACTCCAGTTGATGGAAATCGCGCT
GGAAGTGTTTGCAAAACGAGGCATTGGCCGTGGTGGTCATGCGGATATCGCAGAAATTGCTCAAGTTTCTGTCGCTACCG
TGTTCAACTACTTCCCTACTCGTGAAGATTTGGTCGACGACGTACTGACTTACGTGGTTCGCCAGTTTTCCAACTTTCTC
ACCGACAACATCGATCTCGATATCCACGCGAAAGAGAACCTCACCAACATCACCGATGAAATGGTTAAGCTGGCCAATGA
AGATTGCCACTGGCTGAAAGTGTGGTTTGAATGGAGCGCCTCGACGCGTGACGAAGTATGGCCACTGTTTGTATCCAGTA
ACCGTACCAACCAGTTGCTGGTGAAGAACATGTTCTCGAAAGCCATCGAGCGCGGTGAAGTGTGTGAACAGCACGACCCT
GAAGATCTGGCGACACTGTTCCACGGTGTCTGCTACTCACTGTTTGTGCAAGCCAACCGCGTTCGCGATGAAGGCTACAT
GCGTAAACTGGTGAAAAGCTACCTGGACATGCTGTGCATCTATAAACGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M1KD28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

81.188

98.537

0.8
  hapR Vibrio cholerae C6706

78.713

98.537

0.776
  hapR Vibrio cholerae strain A1552

78.713

98.537

0.776