Detailed information NTG0856571

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QZL35_RS12940
• Genome accession: NZ_CP129940
• Coordinates: 2843597..2844466 (+)
• Length: 289 a.a.
• NCBI ID: WP_064354291.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain I25B
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2838597..2849466

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZL35_RS12920	nadC	2839001..2839888 (+)	888	WP_064354288.1	carboxylating nicotinate-nucleotide diphosphorylase	-
QZL35_RS12925	-	2840150..2840593 (+)	444	WP_064354289.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
QZL35_RS12930	pilB	2840600..2842285 (+)	1686	WP_064354290.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QZL35_RS12935	pilC	2842309..2843532 (+)	1224	WP_017635918.1	type II secretion system F family protein	Machinery gene
QZL35_RS12940	pilD	2843597..2844466 (+)	870	WP_064354291.1	A24 family peptidase	Machinery gene
QZL35_RS12945	coaE	2844467..2845081 (+)	615	WP_064354292.1	dephospho-CoA kinase	-
QZL35_RS12950	zapD	2845109..2845849 (+)	741	WP_005373086.1	cell division protein ZapD	-
QZL35_RS12955	yacG	2846008..2846202 (+)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
QZL35_RS12960	rplS	2846686..2847039 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
QZL35_RS12965	trmD	2847081..2847842 (-)	762	WP_064354293.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
QZL35_RS12970	rimM	2847870..2848418 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
QZL35_RS12975	rpsP	2848448..2848696 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32537.73 Da
• Isoelectric Point: 7.0197

>NTDB_id=856571 QZL35_RS12940 WP_064354291.1 2843597..2844466(+) (pilD) [Vibrio alginolyticus strain I25B]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTAISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGEQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=856571 QZL35_RS12940 WP_064354291.1 2843597..2844466(+) (pilD) [Vibrio alginolyticus strain I25B]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGTCAGAAGTGCGCAACGCCGATACGTATTCGA
GACAACATCCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGCCACAACTGTCAGACAGCCATTAGCGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTAGATACGATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAGGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGAGCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.003	100	0.91
pilD	Vibrio cholerae strain A1552	72.569	99.654	0.723
pilD	Acinetobacter baumannii D1279779	52.222	93.426	0.488
pilD	Acinetobacter nosocomialis M2	51.852	93.426	0.484
pilD	Neisseria gonorrhoeae MS11	48.188	95.502	0.46