Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   QZL35_RS12890 Genome accession   NZ_CP129940
Coordinates   2830103..2830717 (+) Length   204 a.a.
NCBI ID   WP_005379994.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain I25B     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2825103..2835717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL35_RS12870 - 2825387..2826304 (-) 918 WP_005380000.1 ABC transporter ATP-binding protein -
  QZL35_RS12875 - 2826555..2828224 (-) 1670 Protein_2499 SulP family inorganic anion transporter -
  QZL35_RS12880 can 2828506..2829174 (+) 669 WP_005379996.1 carbonate dehydratase -
  QZL35_RS12885 hpt 2829253..2829783 (-) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  QZL35_RS12890 opaR 2830103..2830717 (+) 615 WP_005379994.1 transcriptional regulator OpaR Regulator
  QZL35_RS12895 lpdA 2830856..2832283 (-) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  QZL35_RS12900 aceF 2832551..2834452 (-) 1902 WP_064354287.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23609.89 Da        Isoelectric Point: 6.4042

>NTDB_id=856568 QZL35_RS12890 WP_005379994.1 2830103..2830717(+) (opaR) [Vibrio alginolyticus strain I25B]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=856568 QZL35_RS12890 WP_005379994.1 2830103..2830717(+) (opaR) [Vibrio alginolyticus strain I25B]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGCTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTGGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAACTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACGAATGCGATGATCGAGCTTGTCAGCCAAGA
CTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCTTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCAATTGAACGCGGTGAGGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAGCTGAA
ACATCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711