Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QZL43_RS14945 Genome accession   NZ_CP129938
Coordinates   3206620..3207198 (-) Length   192 a.a.
NCBI ID   WP_015297396.1    Uniprot ID   A0A243VIJ8
Organism   Vibrio parahaemolyticus strain BM21A     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3201620..3212198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL43_RS14920 aroB 3201910..3203010 (-) 1101 WP_005480443.1 3-dehydroquinate synthase -
  QZL43_RS14925 aroK 3203042..3203560 (-) 519 WP_005381319.1 shikimate kinase AroK -
  QZL43_RS14930 pilQ 3203749..3205497 (-) 1749 WP_005488227.1 type IV pilus secretin PilQ Machinery gene
  QZL43_RS14935 pilP 3205529..3206044 (-) 516 WP_005454781.1 pilus assembly protein PilP Machinery gene
  QZL43_RS14940 pilO 3206034..3206627 (-) 594 WP_005496571.1 type 4a pilus biogenesis protein PilO Machinery gene
  QZL43_RS14945 pilN 3206620..3207198 (-) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  QZL43_RS14950 pilM 3207182..3208198 (-) 1017 WP_005496568.1 type IV pilus biogenesis protein PilM Machinery gene
  QZL43_RS14955 - 3208341..3210911 (+) 2571 WP_005496567.1 penicillin-binding protein 1A -
  QZL43_RS14960 oxyR 3210967..3211875 (-) 909 WP_042771235.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22438.95 Da        Isoelectric Point: 6.9944

>NTDB_id=856541 QZL43_RS14945 WP_015297396.1 3206620..3207198(-) (pilN) [Vibrio parahaemolyticus strain BM21A]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG

Nucleotide


Download         Length: 579 bp        

>NTDB_id=856541 QZL43_RS14945 WP_015297396.1 3206620..3207198(-) (pilN) [Vibrio parahaemolyticus strain BM21A]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTCATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCTGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A243VIJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

83.333

100

0.833
  pilN Vibrio cholerae strain A1552

62.983

94.271

0.594