Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   QZL43_RS14935 Genome accession   NZ_CP129938
Coordinates   3205529..3206044 (-) Length   171 a.a.
NCBI ID   WP_005454781.1    Uniprot ID   A0A646LMN6
Organism   Vibrio parahaemolyticus strain BM21A     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3200529..3211044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL43_RS14920 aroB 3201910..3203010 (-) 1101 WP_005480443.1 3-dehydroquinate synthase -
  QZL43_RS14925 aroK 3203042..3203560 (-) 519 WP_005381319.1 shikimate kinase AroK -
  QZL43_RS14930 pilQ 3203749..3205497 (-) 1749 WP_005488227.1 type IV pilus secretin PilQ Machinery gene
  QZL43_RS14935 pilP 3205529..3206044 (-) 516 WP_005454781.1 pilus assembly protein PilP Machinery gene
  QZL43_RS14940 pilO 3206034..3206627 (-) 594 WP_005496571.1 type 4a pilus biogenesis protein PilO Machinery gene
  QZL43_RS14945 pilN 3206620..3207198 (-) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  QZL43_RS14950 pilM 3207182..3208198 (-) 1017 WP_005496568.1 type IV pilus biogenesis protein PilM Machinery gene
  QZL43_RS14955 - 3208341..3210911 (+) 2571 WP_005496567.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18844.96 Da        Isoelectric Point: 10.4351

>NTDB_id=856539 QZL43_RS14935 WP_005454781.1 3205529..3206044(-) (pilP) [Vibrio parahaemolyticus strain BM21A]
MGNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPSDKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=856539 QZL43_RS14935 WP_005454781.1 3205529..3206044(-) (pilP) [Vibrio parahaemolyticus strain BM21A]
ATGGGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTAGGCGAGATGTGGAGAAGCTCAAACCTTCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCGACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTTCAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GACGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTATTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A646LMN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

83.041

100

0.83
  pilP Vibrio cholerae strain A1552

58.14

100

0.585