Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   QZL43_RS13395 Genome accession   NZ_CP129938
Coordinates   2887162..2887776 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM21A     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2882162..2892776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL43_RS13375 - 2882447..2883364 (-) 918 WP_005462584.1 ABC transporter ATP-binding protein -
  QZL43_RS13380 - 2883616..2885286 (-) 1671 WP_021450011.1 SulP family inorganic anion transporter -
  QZL43_RS13385 can 2885570..2886238 (+) 669 WP_005462578.1 carbonate dehydratase -
  QZL43_RS13390 hpt 2886313..2886843 (-) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  QZL43_RS13395 opaR 2887162..2887776 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  QZL43_RS13400 lpdA 2887904..2889331 (-) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  QZL43_RS13405 aceF 2889600..2891486 (-) 1887 WP_062866935.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=856526 QZL43_RS13395 WP_005479697.1 2887162..2887776(+) (opaR) [Vibrio parahaemolyticus strain BM21A]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=856526 QZL43_RS13395 WP_005479697.1 2887162..2887776(+) (opaR) [Vibrio parahaemolyticus strain BM21A]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
GGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701