Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   V9Z42_RS23410 Genome accession   NZ_CP146663
Coordinates   4800869..4802278 (+) Length   469 a.a.
NCBI ID   WP_001315107.1    Uniprot ID   A0A0H2Z4V2
Organism   Escherichia coli strain MS 110-3     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 4795869..4807278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9Z42_RS23395 (V9Z42_23395) typA 4796029..4797852 (-) 1824 WP_000570668.1 ribosome-dependent GTPase TypA -
  V9Z42_RS23400 (V9Z42_23400) glnA 4798225..4799634 (+) 1410 WP_001271706.1 glutamate--ammonia ligase -
  V9Z42_RS23405 (V9Z42_23405) glnL 4799808..4800857 (+) 1050 WP_000190574.1 nitrogen regulation protein NR(II) -
  V9Z42_RS23410 (V9Z42_23410) luxO 4800869..4802278 (+) 1410 WP_001315107.1 nitrogen regulation protein NR(I) Regulator
  V9Z42_RS23415 (V9Z42_23415) yshB 4802390..4802500 (+) 111 WP_000893994.1 YshB family small membrane protein -
  V9Z42_RS23420 (V9Z42_23420) hemN 4802638..4804011 (-) 1374 WP_000116096.1 oxygen-independent coproporphyrinogen III oxidase -
  V9Z42_RS23425 (V9Z42_23425) yihI 4804200..4804709 (-) 510 WP_001351246.1 Der GTPase-activating protein YihI -
  V9Z42_RS23430 (V9Z42_23430) - 4804828..4804994 (-) 167 Protein_4581 hypothetical protein -
  V9Z42_RS23435 (V9Z42_23435) yihA 4805291..4805923 (+) 633 WP_000183349.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52302.79 Da        Isoelectric Point: 6.5091

>NTDB_id=856501 V9Z42_RS23410 WP_001315107.1 4800869..4802278(+) (luxO) [Escherichia coli strain MS 110-3]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR
LARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESNVPESTSHMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=856501 V9Z42_RS23410 WP_001315107.1 4800869..4802278(+) (luxO) [Escherichia coli strain MS 110-3]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACGACATTTGAGAACGGCGCGGAAGTACTGGAGGCGCTGGCGAGCAAAACGCCGGATGTGCTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCGCTGCTCAAGCAGATTAAACAGCGCCATCCGATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAAGGGGCATTTGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCCGTGGCGCTGGTTGAGCGCGCCATCAGTCATTACCAGGAACAGCAGCAGCCGCGTAATGTTCAGCTTA
ACGGCCCAACGACCGATATCATCGGTGAAGCGCCAGCCATGCAGGACGTGTTCCGGATTATCGGTCGGCTTTCGCGTTCT
TCTATTAGCGTGCTGATTAACGGCGAGTCCGGCACCGGTAAAGAACTGGTCGCTCATGCCCTTCATCGCCACAGTCCGCG
AGCCAAAGCGCCATTTATCGCGCTGAATATGGCGGCTATCCCGAAGGATTTGATCGAATCCGAACTGTTTGGTCACGAGA
AAGGCGCATTTACCGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAAGCTGATGGCGGTACATTATTTCTCGATGAA
ATTGGCGATATGCCGCTGGATGTGCAGACGCGTTTGCTGCGCGTGCTGGCAGATGGTCAGTTTTATCGCGTTGGCGGCTA
TGCGCCGGTGAAAGTGGATGTGCGGATTATCGCTGCCACTCACCAGAATCTTGAACAGCGGGTGCAGGAAGGCAAGTTCC
GTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAACGTCGGGAAGATATTCCCCGT
CTGGCACGCCATTTTTTACAGGTTGCCGCGCGAGAGCTGGGCGTAGAAGCGAAGTTGCTGCATCCGGAAACCGAAGCCGC
GCTGACGCGTCTGGCGTGGCCAGGCAACGTGCGCCAGCTGGAAAACACCTGTCGCTGGCTAACGGTGATGGCTGCCGGAC
AGGAAGTGTTGATTCAGGATTTGCCTGGCGAACTGTTTGAATCAAACGTACCGGAAAGCACTTCACACATGCAGCCGGAC
AGTTGGGCAACGCTGTTAGCACAGTGGGCAGACAGAGCGCTGCGTTCCGGTCATCAAAACCTGCTTTCCGAAGCACAGCC
AGAGCTGGAACGGACGTTACTGACCACCGCGCTGCGACATACGCAGGGGCATAAACAGGAAGCGGCGCGGCTACTTGGCT
GGGGCCGCAACACCCTGACGCGTAAGTTAAAAGAGCTGGGGATGGAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2Z4V2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

39.655

98.934

0.392
  pilR Pseudomonas aeruginosa PAK

38.854

100

0.39