Detailed information NTG0856485

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QZL40_RS13175
• Genome accession: NZ_CP129936
• Coordinates: 2815167..2816036 (+)
• Length: 289 a.a.
• NCBI ID: WP_025533026.1
• Uniprot ID: A0AA41A9T5
• Organism: Vibrio parahaemolyticus strain I13A
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2810167..2821036

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZL40_RS13155	nadC	2810561..2811448 (+)	888	WP_025638275.1	carboxylating nicotinate-nucleotide diphosphorylase	-
QZL40_RS13160	-	2811712..2812170 (+)	459	WP_021486793.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
QZL40_RS13165	pilB	2812170..2813855 (+)	1686	WP_029855968.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QZL40_RS13170	pilC	2813879..2815102 (+)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
QZL40_RS13175	pilD	2815167..2816036 (+)	870	WP_025533026.1	A24 family peptidase	Machinery gene
QZL40_RS13180	coaE	2816037..2816651 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
QZL40_RS13185	zapD	2816679..2817419 (+)	741	WP_023624252.1	cell division protein ZapD	-
QZL40_RS13190	yacG	2817488..2817682 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
QZL40_RS13195	rplS	2818119..2818472 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
QZL40_RS13200	trmD	2818514..2819257 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
QZL40_RS13205	rimM	2819285..2819833 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
QZL40_RS13210	rpsP	2819862..2820110 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32405.49 Da
• Isoelectric Point: 7.1971

>NTDB_id=856485 QZL40_RS13175 WP_025533026.1 2815167..2816036(+) (pilD) [Vibrio parahaemolyticus strain I13A]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=856485 QZL40_RS13175 WP_025533026.1 2815167..2816036(+) (pilD) [Vibrio parahaemolyticus strain I13A]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGCTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTGAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45