Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   QZL40_RS13125 Genome accession   NZ_CP129936
Coordinates   2801689..2802303 (+) Length   204 a.a.
NCBI ID   WP_308390585.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain I13A     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2796689..2807303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL40_RS13105 - 2796974..2797891 (-) 918 WP_005462584.1 ABC transporter ATP-binding protein -
  QZL40_RS13110 - 2798144..2799814 (-) 1671 WP_005493993.1 SulP family inorganic anion transporter -
  QZL40_RS13115 can 2800098..2800766 (+) 669 WP_005462578.1 carbonate dehydratase -
  QZL40_RS13120 hpt 2800840..2801370 (-) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  QZL40_RS13125 opaR 2801689..2802303 (+) 615 WP_308390585.1 transcriptional regulator OpaR Regulator
  QZL40_RS13130 lpdA 2802431..2803858 (-) 1428 WP_308390583.1 dihydrolipoyl dehydrogenase -
  QZL40_RS13135 aceF 2804126..2806012 (-) 1887 WP_140077977.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23648.96 Da        Isoelectric Point: 6.0781

>NTDB_id=856482 QZL40_RS13125 WP_308390585.1 2801689..2802303(+) (opaR) [Vibrio parahaemolyticus strain I13A]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEILNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=856482 QZL40_RS13125 WP_308390585.1 2801689..2802303(+) (opaR) [Vibrio parahaemolyticus strain I13A]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAATTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGACCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

99.51

100

0.995
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696