Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KJS40_RS10235 Genome accession   NZ_AP024515
Coordinates   2278326..2279126 (-) Length   266 a.a.
NCBI ID   WP_213537521.1    Uniprot ID   -
Organism   Nitrosospira sp. NRS527     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2273326..2284126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJS40_RS10215 (NNRS527_02163) - 2274977..2276113 (-) 1137 WP_244859541.1 efflux RND transporter periplasmic adaptor subunit -
  KJS40_RS10220 (NNRS527_02164) - 2276279..2276965 (-) 687 WP_025042042.1 ABC transporter ATP-binding protein -
  KJS40_RS10225 (NNRS527_02165) - 2276964..2277647 (+) 684 WP_213537517.1 arylesterase -
  KJS40_RS10230 (NNRS527_02166) - 2277769..2278266 (+) 498 WP_213537519.1 universal stress protein -
  KJS40_RS10235 (NNRS527_02167) comL 2278326..2279126 (-) 801 WP_213537521.1 outer membrane protein assembly factor BamD Machinery gene
  KJS40_RS10240 (NNRS527_02168) rluD 2279125..2280126 (+) 1002 WP_213537523.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KJS40_RS10245 (NNRS527_02169) pgeF 2280143..2280877 (+) 735 WP_213537524.1 peptidoglycan editing factor PgeF -
  KJS40_RS10250 (NNRS527_02170) - 2281021..2281827 (+) 807 WP_213537526.1 ZIP family metal transporter -
  KJS40_RS10255 (NNRS527_02171) rimO 2281937..2283280 (+) 1344 WP_213537528.1 30S ribosomal protein S12 methylthiotransferase RimO -
  KJS40_RS10260 (NNRS527_02172) - 2283498..2283965 (+) 468 WP_213537530.1 cytochrome c -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30388.43 Da        Isoelectric Point: 8.5274

>NTDB_id=85647 KJS40_RS10235 WP_213537521.1 2278326..2279126(-) (comL) [Nitrosospira sp. NRS527]
MSRSVALFLVLLLSACGLLSKEVKDSKNWSASKYYSEAKSELNEGNYGGAIKLFEALEARYPYGRFAQQAQLEVAYAYYK
DGEQATAIAAADRFIKLHPNHTNVDYAYYLKGLSNFNDDLGLMGIVSEKILNQDMSERDPKASRESFENFKELVSRYPKS
KYAADAVQRMKHLVNVVALNEVQVARYYIKRGGYVAAANRAQYALKEYPQTPATEEALFIMMKSYDALGMTDLRDDAHRV
MKKNFPDSRFFEDSTGKSAEPWWRFW

Nucleotide


Download         Length: 801 bp        

>NTDB_id=85647 KJS40_RS10235 WP_213537521.1 2278326..2279126(-) (comL) [Nitrosospira sp. NRS527]
ATGTCACGTAGTGTAGCTTTATTTCTGGTGTTGCTGCTATCCGCATGCGGGCTGTTGTCCAAAGAGGTGAAGGACTCCAA
GAATTGGTCCGCAAGCAAGTACTACTCTGAAGCAAAATCGGAATTGAATGAAGGGAATTATGGAGGCGCCATCAAGCTAT
TCGAAGCGCTGGAGGCACGTTATCCCTACGGCCGCTTTGCGCAGCAGGCGCAGCTTGAAGTCGCGTATGCCTATTATAAA
GATGGTGAACAGGCCACGGCTATTGCGGCTGCCGACCGCTTTATCAAGCTTCATCCCAATCATACCAATGTCGATTATGC
GTATTACCTCAAGGGCCTGTCGAATTTCAACGATGATCTCGGATTGATGGGCATCGTGTCGGAAAAAATTCTCAATCAGG
ATATGAGCGAGCGTGATCCGAAAGCGTCACGCGAATCATTTGAAAATTTCAAGGAATTAGTGTCCCGTTATCCCAAAAGC
AAATACGCGGCCGATGCGGTACAGCGAATGAAGCATCTGGTTAATGTGGTGGCTTTGAATGAAGTCCAGGTGGCACGTTA
TTACATCAAGCGGGGCGGTTACGTTGCCGCTGCCAACCGTGCTCAATATGCGCTGAAGGAATACCCGCAGACTCCGGCCA
CGGAAGAAGCGTTATTCATCATGATGAAATCGTACGATGCGCTGGGTATGACCGATTTGCGTGATGATGCGCATCGCGTG
ATGAAAAAAAATTTCCCCGATAGCCGATTCTTCGAGGATTCAACTGGAAAAAGCGCTGAACCCTGGTGGAGATTCTGGTA
A

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(30-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

49.057

99.624

0.489
  comL Neisseria gonorrhoeae MS11

47.925

99.624

0.477

Multiple sequence alignment