Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   QZL36_RS12660 Genome accession   NZ_CP129932
Coordinates   2759808..2760422 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus isolate BM18B     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2754808..2765422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL36_RS12640 - 2755094..2756011 (-) 918 WP_005462584.1 ABC transporter ATP-binding protein -
  QZL36_RS12645 - 2756263..2757933 (-) 1671 WP_005479694.1 SulP family inorganic anion transporter -
  QZL36_RS12650 can 2758217..2758885 (+) 669 WP_005462578.1 carbonate dehydratase -
  QZL36_RS12655 hpt 2758959..2759489 (-) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  QZL36_RS12660 opaR 2759808..2760422 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  QZL36_RS12665 lpdA 2760550..2761977 (-) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  QZL36_RS12670 aceF 2762246..2764147 (-) 1902 WP_140302422.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=856438 QZL36_RS12660 WP_005479697.1 2759808..2760422(+) (opaR) [Vibrio parahaemolyticus isolate BM18B]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=856438 QZL36_RS12660 WP_005479697.1 2759808..2760422(+) (opaR) [Vibrio parahaemolyticus isolate BM18B]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTACGTCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701