Detailed information NTG0856395

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QZL34_RS13280
• Genome accession: NZ_CP129930
• Coordinates: 2856232..2857101 (+)
• Length: 289 a.a.
• NCBI ID: WP_140154970.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus isolate BM24A
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2851232..2862101

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZL34_RS13260	nadC	2851631..2852518 (+)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-
QZL34_RS13265	-	2852781..2853233 (+)	453	WP_029846089.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
QZL34_RS13270	pilB	2853235..2854920 (+)	1686	WP_315868304.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QZL34_RS13275	pilC	2854944..2856167 (+)	1224	WP_315868305.1	type II secretion system F family protein	Machinery gene
QZL34_RS13280	pilD	2856232..2857101 (+)	870	WP_140154970.1	A24 family peptidase	Machinery gene
QZL34_RS13285	coaE	2857102..2857716 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
QZL34_RS13290	zapD	2857744..2858484 (+)	741	WP_015297254.1	cell division protein ZapD	-
QZL34_RS13295	yacG	2858553..2858747 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
QZL34_RS13300	rplS	2859155..2859508 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
QZL34_RS13305	trmD	2859550..2860293 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
QZL34_RS13310	rimM	2860321..2860869 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
QZL34_RS13315	rpsP	2860898..2861146 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32404.50 Da
• Isoelectric Point: 7.5706

>NTDB_id=856395 QZL34_RS13280 WP_140154970.1 2856232..2857101(+) (pilD) [Vibrio parahaemolyticus isolate BM24A]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQNAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=856395 QZL34_RS13280 WP_140154970.1 2856232..2857101(+) (pilD) [Vibrio parahaemolyticus isolate BM24A]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAAACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTATGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45