Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   QZL34_RS13230 Genome accession   NZ_CP129930
Coordinates   2842758..2843372 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus isolate BM24A     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2837758..2848372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL34_RS13210 - 2838043..2838960 (-) 918 WP_005462584.1 ABC transporter ATP-binding protein -
  QZL34_RS13215 - 2839213..2840883 (-) 1671 WP_315868302.1 SulP family inorganic anion transporter -
  QZL34_RS13220 can 2841167..2841835 (+) 669 WP_005462578.1 carbonate dehydratase -
  QZL34_RS13225 hpt 2841909..2842439 (-) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  QZL34_RS13230 opaR 2842758..2843372 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  QZL34_RS13235 lpdA 2843499..2844926 (-) 1428 WP_315868303.1 dihydrolipoyl dehydrogenase -
  QZL34_RS13240 aceF 2845196..2847082 (-) 1887 WP_015297248.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=856392 QZL34_RS13230 WP_005479697.1 2842758..2843372(+) (opaR) [Vibrio parahaemolyticus isolate BM24A]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=856392 QZL34_RS13230 WP_005479697.1 2842758..2843372(+) (opaR) [Vibrio parahaemolyticus isolate BM24A]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
GGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701