Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   QZL34_RS05740 Genome accession   NZ_CP129930
Coordinates   1203356..1204759 (+) Length   467 a.a.
NCBI ID   WP_005461534.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus isolate BM24A     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1198356..1209759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL34_RS05720 rsxB 1198867..1199463 (-) 597 WP_005480813.1 electron transport complex subunit RsxB -
  QZL34_RS05725 rsxA 1199467..1200045 (-) 579 WP_005380762.1 electron transport complex subunit RsxA -
  QZL34_RS05735 uvrB 1201036..1203066 (+) 2031 WP_005494496.1 excinuclease ABC subunit UvrB -
  QZL34_RS05740 luxO 1203356..1204759 (+) 1404 WP_005461534.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  QZL34_RS05745 luxU 1204762..1205100 (+) 339 WP_140244691.1 quorum-sensing phosphorelay protein LuxU -
  QZL34_RS05750 - 1205177..1206070 (-) 894 WP_005494500.1 YvcK family protein -
  QZL34_RS05755 moaA 1206366..1207355 (+) 990 WP_005494502.1 GTP 3',8-cyclase MoaA -
  QZL34_RS05760 moaB 1207458..1207970 (+) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -
  QZL34_RS05765 moaC 1207997..1208476 (+) 480 WP_140094666.1 cyclic pyranopterin monophosphate synthase MoaC -
  QZL34_RS05770 moaD 1208473..1208730 (+) 258 WP_005461535.1 molybdopterin synthase sulfur carrier subunit -
  QZL34_RS05775 moaE 1208732..1209187 (+) 456 WP_005461480.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52173.71 Da        Isoelectric Point: 6.2547

>NTDB_id=856381 QZL34_RS05740 WP_005461534.1 1203356..1204759(+) (luxO) [Vibrio parahaemolyticus isolate BM24A]
MQQKTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
VSKLIEPKAMTVSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=856381 QZL34_RS05740 WP_005461534.1 1203356..1204759(+) (luxO) [Vibrio parahaemolyticus isolate BM24A]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTCTGATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCG
CTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGTCTCAATCATCGAA
TTCCAGATCTTATTCTTCTCGATCTTCGTCTGCCTGATATGACGGGGATGGATGTTTTGCACGCCGTTAAAAAGAGTCAT
CCAGATGTGCCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAAGCGATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGGTCAACAACGCAATTCGCAAAGCAACTAAGCTAAAAA
ATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTATCGGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACC
ATTGACTCTGCCGCTAGCAGTAAAGCGAGTATCTTTATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGC
CATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCATCAACTGTGCAGCCATACCTAAAGACTTAATTGAAA
GTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCAAATGACCGTCAAGGTGCCGCTGAGTTAGCCGATGGT
GGCACGTTGTTCCTCGATGAATTGTGTGAAATGGATTTGGACTTACAAACCAAATTATTGCGATTCATCCAAACCGGTAC
TTTCCAAAAAGTAGGCTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGGCGTTTCCGCGAAGACTTATACTACCGTTTATACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAA
CGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGCTACATGTCTCATGAAGAGGGCAAAAACTTTGTCCGCTT
TTCTCAAGAAGTGATTGATCGCTTTAACAGTTATGAGTGGCCGGGTAACGTCCGACAACTACAAAACGTATTGCGTAATA
TCGTGGTGCTTAACAACGGCAAAGAAATTACGTTAGATATGTTGCCACCGCCGCTGAATCAACCATTAGATAGGCCATCT
GTATCTAAACTGATTGAGCCAAAAGCGATGACTGTTTCAGAGATCATGCCGCTATGGATGACAGAGAAAATGGCGATTGA
ACAAGCGATTGAGGCGTGTGACGGTAATATTCCAAGAGCCGCTGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCA
AACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.5

95.931

0.839
  pilR Pseudomonas aeruginosa PAK

38.393

95.931

0.368