Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QZJ86_RS17265 Genome accession   NZ_CP129884
Coordinates   3737308..3738648 (-) Length   446 a.a.
NCBI ID   WP_301671719.1    Uniprot ID   -
Organism   Methylomonas montana strain MW1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3732308..3743648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZJ86_RS17250 (QZJ86_17250) - 3733757..3734608 (-) 852 WP_301671716.1 HDOD domain-containing protein -
  QZJ86_RS17255 (QZJ86_17255) - 3734788..3736623 (+) 1836 WP_301671717.1 EAL domain-containing protein -
  QZJ86_RS17260 (QZJ86_17260) - 3736773..3737261 (+) 489 WP_301671718.1 hypothetical protein -
  QZJ86_RS17265 (QZJ86_17265) pilR 3737308..3738648 (-) 1341 WP_301671719.1 sigma-54 dependent transcriptional regulator Regulator
  QZJ86_RS17270 (QZJ86_17270) - 3738645..3740270 (-) 1626 WP_301671720.1 PAS domain-containing sensor histidine kinase -
  QZJ86_RS17275 (QZJ86_17275) sucC 3740369..3741571 (+) 1203 WP_301671721.1 ADP-forming succinate--CoA ligase subunit beta -
  QZJ86_RS17280 (QZJ86_17280) sucD 3741571..3742437 (+) 867 WP_301671722.1 succinate--CoA ligase subunit alpha -
  QZJ86_RS17285 (QZJ86_17285) - 3742509..3742679 (+) 171 WP_301671723.1 DUF4160 domain-containing protein -
  QZJ86_RS17290 (QZJ86_17290) - 3742657..3742902 (+) 246 WP_301671724.1 DUF2442 domain-containing protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49270.92 Da        Isoelectric Point: 6.1988

>NTDB_id=856203 QZJ86_RS17265 WP_301671719.1 3737308..3738648(-) (pilR) [Methylomonas montana strain MW1]
MNMPITLVVDDEPDIRELLEITLNRMQIQTRSAASLAEAKQLLAGQTFDLCLTDMKLPDGDGLDLVDYIQSAGLQLPVAV
ITAHGSMDIAIKAMKKGAFDFLSKPVDLAVLRKLVSHALQASLSRVNEKERRTRDILLGESALMCNIRSKINKVARNQAP
VYISGESGAGKELVARLIHQQSPRGDKPFIAINCGAIPQELMESEFFGHRKGSFTGAVADKQGLFQAADGGTLFLDEVAD
LPLALQVKLLRAIQEKKIRPIGEQREVAVDVRLLSATHKDLTKMVQDGSFRQDLYYRINVIELSLPPLRARPADIPQLTE
HLLRGLAQANGMALPKLSDAATNALKNYYFPGNVRELENILERALALHEGGMIEVDDLNLPLGLELAAAEDFDAEKMSLE
SYLEDIEKKALSTALEDNRWNKTATAKQLGLTFRSLRYRLKKLGLE

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=856203 QZJ86_RS17265 WP_301671719.1 3737308..3738648(-) (pilR) [Methylomonas montana strain MW1]
ATGAATATGCCCATTACACTGGTGGTCGACGATGAACCCGACATCAGAGAATTACTCGAAATCACCCTAAACCGCATGCA
GATCCAGACCCGCTCTGCGGCGAGTTTGGCGGAAGCCAAACAATTGTTGGCGGGACAGACTTTTGATTTGTGTTTAACCG
ATATGAAATTGCCGGATGGCGATGGACTGGACCTGGTCGATTATATTCAGTCGGCCGGCTTGCAATTGCCGGTGGCGGTG
ATTACCGCGCACGGCAGCATGGATATCGCTATCAAGGCGATGAAAAAGGGCGCTTTTGACTTTCTATCCAAACCGGTCGA
TCTGGCAGTGCTCAGAAAACTGGTCAGTCATGCCTTGCAGGCCTCACTAAGCCGTGTGAACGAAAAGGAGCGGCGCACCC
GCGATATCTTGTTGGGTGAATCGGCGTTGATGTGCAATATTCGTTCAAAGATCAATAAGGTGGCCCGCAATCAGGCGCCG
GTTTACATTAGTGGTGAATCCGGTGCCGGTAAGGAATTGGTGGCCAGATTGATTCATCAACAGAGCCCGCGCGGCGATAA
ACCCTTTATCGCCATCAACTGTGGAGCGATCCCGCAAGAGTTGATGGAAAGCGAATTCTTCGGGCACAGAAAAGGCAGTT
TCACCGGGGCTGTCGCCGATAAGCAAGGCTTATTTCAGGCCGCCGATGGCGGCACCCTGTTTCTCGATGAAGTAGCCGAT
TTGCCGTTGGCATTGCAAGTCAAATTGTTACGAGCGATACAAGAGAAAAAAATTAGGCCCATCGGCGAGCAGCGAGAAGT
GGCCGTCGATGTGCGTCTATTAAGTGCCACGCATAAGGATTTAACCAAGATGGTCCAGGATGGCAGTTTTAGGCAGGACT
TGTATTATCGGATCAATGTCATTGAACTAAGCTTGCCACCGCTGCGAGCCAGGCCGGCCGATATTCCGCAGCTCACCGAG
CATTTATTGCGCGGCCTGGCGCAGGCCAACGGCATGGCATTGCCTAAATTGTCGGATGCGGCCACTAATGCCTTAAAGAA
TTATTATTTCCCCGGCAATGTCCGTGAACTGGAAAATATACTGGAGAGAGCCCTGGCGCTGCACGAGGGCGGTATGATCG
AGGTTGACGATCTGAATTTGCCGTTGGGGCTGGAGTTGGCGGCGGCCGAGGATTTTGACGCGGAAAAAATGTCGCTGGAA
AGCTATCTTGAGGACATTGAAAAAAAGGCCTTGAGCACTGCGCTGGAGGATAATCGCTGGAACAAAACCGCAACCGCCAA
GCAGTTAGGTTTGACCTTTCGGTCGCTGCGATATCGGCTGAAAAAATTAGGCTTGGAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(138-303)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.252

100

0.637
  pilR Acinetobacter baumannii strain A118

49.356

100

0.516