Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   V8946_RS03315 Genome accession   NZ_CP146591
Coordinates   412633..413370 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain A1.S1.65     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 407633..418370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8946_RS03285 (V8946_03285) yfiL 407792..408157 (-) 366 WP_000976008.1 DUF2799 domain-containing protein -
  V8946_RS03290 (V8946_03290) aroF 408367..409437 (+) 1071 WP_001168025.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  V8946_RS03295 (V8946_03295) tyrA 409448..410569 (+) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  V8946_RS03300 (V8946_03300) pheA 410612..411772 (-) 1161 WP_000200107.1 bifunctional chorismate mutase/prephenate dehydratase -
  V8946_RS03305 (V8946_03305) pheL 411871..411918 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  V8946_RS03310 (V8946_03310) raiA 412022..412363 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  V8946_RS03315 (V8946_03315) comL 412633..413370 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  V8946_RS03320 (V8946_03320) rluD 413505..414485 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  V8946_RS03325 (V8946_03325) yfiH 414482..415213 (+) 732 WP_000040137.1 purine nucleoside phosphorylase YfiH -
  V8946_RS03330 (V8946_03330) clpC 415343..417916 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=855847 V8946_RS03315 WP_000197686.1 412633..413370(-) (comL) [Escherichia coli strain A1.S1.65]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=855847 V8946_RS03315 WP_000197686.1 412633..413370(-) (comL) [Escherichia coli strain A1.S1.65]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376