Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   V8958_RS25270 Genome accession   NZ_CP146588
Coordinates   4857524..4858261 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain A1.S1.126     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4852524..4863261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8958_RS25255 (V8958_25260) clpC 4852978..4855551 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  V8958_RS25260 (V8958_25265) yfiH 4855681..4856412 (-) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  V8958_RS25265 (V8958_25270) rluD 4856409..4857389 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  V8958_RS25270 (V8958_25275) comL 4857524..4858261 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  V8958_RS25275 (V8958_25280) raiA 4858530..4858871 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  V8958_RS25280 (V8958_25285) pheL 4858975..4859022 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  V8958_RS25285 (V8958_25290) pheA 4859121..4860281 (+) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  V8958_RS25290 (V8958_25295) tyrA 4860324..4861445 (-) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  V8958_RS25295 (V8958_25300) aroF 4861456..4862526 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  V8958_RS25300 (V8958_25305) yfiL 4862736..4863101 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=855832 V8958_RS25270 WP_000197686.1 4857524..4858261(+) (comL) [Escherichia coli strain A1.S1.126]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=855832 V8958_RS25270 WP_000197686.1 4857524..4858261(+) (comL) [Escherichia coli strain A1.S1.126]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376