Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   KJS82_RS05890 Genome accession   NZ_AP024511
Coordinates   1149765..1150751 (-) Length   328 a.a.
NCBI ID   WP_000959282.1    Uniprot ID   A0A7U7EXT8
Organism   Staphylococcus aureus isolate 2007-13     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context


Location: 1144765..1155751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJS82_RS05865 (RVB3_10880) - 1145025..1145372 (-) 348 WP_001242103.1 hypothetical protein -
  KJS82_RS05870 (RVB3_10890) - 1145558..1146151 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  KJS82_RS05875 (RVB3_10900) - 1146255..1146620 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  KJS82_RS05880 (RVB3_10910) yjbH 1146643..1147449 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  KJS82_RS05885 (RVB3_10920) pepF 1147909..1149717 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  KJS82_RS05890 (RVB3_10930) coiA 1149765..1150751 (-) 987 WP_000959282.1 competence protein CoiA family protein Machinery gene
  KJS82_RS05895 (RVB3_10940) mecA 1150872..1151591 (-) 720 WP_001217728.1 adaptor protein MecA -
  KJS82_RS05900 (RVB3_10950) spxA 1151962..1152357 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  KJS82_RS05905 (RVB3_10960) trpS 1152651..1153640 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  KJS82_RS05910 (RVB3_10970) opp4C 1153682..1154563 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  KJS82_RS05915 (RVB3_10980) opp4B 1154575..1155537 (-) 963 WP_000915997.1 oligopeptide ABC transporter permease -

Sequence


Protein


Download         Length: 328 a.a.        Molecular weight: 38878.55 Da        Isoelectric Point: 9.5714

>NTDB_id=85575 KJS82_RS05890 WP_000959282.1 1149765..1150751(-) (coiA) [Staphylococcus aureus isolate 2007-13]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFHSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVYNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=85575 KJS82_RS05890 WP_000959282.1 1149765..1150751(-) (coiA) [Staphylococcus aureus isolate 2007-13]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCTGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCATAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGTACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A7U7EXT8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

100

100

1

  coiA Staphylococcus aureus MW2

97.561

100

0.976


Multiple sequence alignment