Detailed information NTG0855221

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QYQ76_RS04395
• Genome accession: NZ_CP129730
• Coordinates: 952463..953263 (-)
• Length: 266 a.a.
• NCBI ID: WP_019705879.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 2018C07-244
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 947463..958263

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYQ76_RS04375 (QYQ76_04375)	dksA	948043..948498 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
QYQ76_RS04380 (QYQ76_04380)	sfsA	948661..949377 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
QYQ76_RS04385 (QYQ76_04385)	thpR	949377..949913 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
QYQ76_RS04390 (QYQ76_04390)	hrpB	949986..952415 (+)	2430	WP_069339358.1	ATP-dependent helicase HrpB	-
QYQ76_RS04395 (QYQ76_04395)	pilD	952463..953263 (-)	801	WP_019705879.1	A24 family peptidase	Machinery gene
QYQ76_RS04400 (QYQ76_04400)	-	953260..954006 (-)	747	WP_004145897.1	type II secretion system protein N	-
QYQ76_RS04405 (QYQ76_04405)	-	953996..954481 (-)	486	WP_004183037.1	type II secretion system protein M	-
QYQ76_RS04410 (QYQ76_04410)	gspL	954474..955667 (-)	1194	WP_019705880.1	type II secretion system protein GspL	-
QYQ76_RS04415 (QYQ76_04415)	gspK	955654..956640 (-)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
QYQ76_RS04420 (QYQ76_04420)	gspJ	956637..957233 (-)	597	WP_019705881.1	type II secretion system minor pseudopilin GspJ	-
QYQ76_RS04425 (QYQ76_04425)	gspI	957230..957595 (-)	366	WP_004894160.1	type II secretion system minor pseudopilin GspI	-
QYQ76_RS04430 (QYQ76_04430)	gspH	957592..958107 (-)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29435.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=855221 QYQ76_RS04395 WP_019705879.1 952463..953263(-) (pilD) [Klebsiella pneumoniae strain 2018C07-244]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=855221 QYQ76_RS04395 WP_019705879.1 952463..953263(-) (pilD) [Klebsiella pneumoniae strain 2018C07-244]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGAGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425