Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FIA71_RS09215 Genome accession   NZ_CP146507
Coordinates   1851611..1852348 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 10     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1846611..1857348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIA71_RS09200 (FIA71_009200) clpC 1847065..1849638 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  FIA71_RS09205 (FIA71_009205) yfiH 1849768..1850499 (-) 732 WP_000040149.1 purine nucleoside phosphorylase YfiH -
  FIA71_RS09210 (FIA71_009210) rluD 1850496..1851476 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FIA71_RS09215 (FIA71_009215) comL 1851611..1852348 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FIA71_RS09220 (FIA71_009220) raiA 1852619..1852960 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FIA71_RS09225 (FIA71_009225) pheL 1853064..1853111 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  FIA71_RS09230 (FIA71_009230) pheA 1853210..1854370 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  FIA71_RS09235 (FIA71_009235) tyrA 1854413..1855534 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  FIA71_RS09240 (FIA71_009240) aroF 1855545..1856615 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  FIA71_RS09245 (FIA71_009245) yfiL 1856825..1857190 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=855210 FIA71_RS09215 WP_000197686.1 1851611..1852348(+) (comL) [Escherichia coli strain 10]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=855210 FIA71_RS09215 WP_000197686.1 1851611..1852348(+) (comL) [Escherichia coli strain 10]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376