Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   V8690_RS08690 Genome accession   NZ_CP146350
Coordinates   1848446..1849087 (-) Length   213 a.a.
NCBI ID   WP_338777051.1    Uniprot ID   -
Organism   Streptomyces sp. DG1A-41     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1843446..1854087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8690_RS08660 (V8690_08660) - 1843936..1844442 (+) 507 WP_114251210.1 HNH endonuclease -
  V8690_RS08665 (V8690_08665) - 1844514..1845473 (-) 960 WP_059423441.1 SPFH domain-containing protein -
  V8690_RS08670 (V8690_08670) - 1845605..1846036 (-) 432 WP_086847490.1 NfeD family protein -
  V8690_RS08675 (V8690_08675) - 1846131..1846928 (-) 798 WP_059423446.1 ABC transporter ATP-binding protein -
  V8690_RS08680 (V8690_08680) - 1847090..1847875 (+) 786 WP_338777047.1 hypothetical protein -
  V8690_RS08685 (V8690_08685) - 1848047..1848289 (-) 243 WP_338777049.1 chaplin -
  V8690_RS08690 (V8690_08690) vraR 1848446..1849087 (-) 642 WP_338777051.1 response regulator transcription factor Regulator
  V8690_RS08695 (V8690_08695) - 1849080..1850225 (-) 1146 WP_338777053.1 GAF domain-containing sensor histidine kinase -
  V8690_RS08700 (V8690_08700) - 1850461..1851159 (+) 699 WP_338777055.1 SDR family oxidoreductase -
  V8690_RS08705 (V8690_08705) - 1851156..1852199 (+) 1044 WP_338777056.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  V8690_RS08710 (V8690_08710) - 1852564..1853292 (+) 729 WP_338777057.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23037.28 Da        Isoelectric Point: 4.9881

>NTDB_id=855125 V8690_RS08690 WP_338777051.1 1848446..1849087(-) (vraR) [Streptomyces sp. DG1A-41]
MADAIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVDRAEELRPDVILMDVKMPGMDGVDALRRLRELDNPAR
VLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSIHAGHILLQPEVADALLSQEQANSSPGRAGSLTDREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGVAG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=855125 V8690_RS08690 WP_338777051.1 1848446..1849087(-) (vraR) [Streptomyces sp. DG1A-41]
GTGGCTGACGCAATCAAGGTGCTGCTCGTCGACGACCACCAGGTCGTCCGCCGGGGCCTGCGCACGTTCCTCGAGGTACA
GGACGACATCGAGGTCGTCGGCGAGGCGGCGGACGGCGCCGAAGGCGTCGACCGCGCGGAGGAGCTGCGGCCCGACGTCA
TCCTCATGGATGTCAAGATGCCGGGCATGGACGGCGTCGACGCGCTGCGCAGACTCCGCGAACTGGACAACCCCGCGCGC
GTGCTGATCGTCACCAGCTTCACCGAGCAGCGCACGGTGGTCCCGGCCCTGCGCGCGGGCGCCGCCGGCTACGTCTACAA
GGACGTCGACCCCGACGCCCTCGCCGGAGCCATCCGCTCCATCCATGCCGGACACATCCTCCTCCAGCCGGAGGTCGCCG
ACGCCCTGCTGTCCCAGGAGCAGGCCAACTCGAGTCCGGGGAGGGCCGGTTCGCTCACCGACCGGGAGCGTGAGGTGCTC
GGCCTGATAGCGGACGGCCGCTCCAACCGGGAGATCGCCCGCGCCCTCGTGCTCTCCGAGAAGACCGTCAAGACCCATGT
CTCGAACATCCTGATGAAACTCGACCTGGCCGACCGAACGCAGGCCGCCCTGTGGGCCGTTCGCCATGGCGTGGCCGGCT
GA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.698

99.531

0.465
  degU Bacillus subtilis subsp. subtilis str. 168

37.557

100

0.39